View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12714_low_8 (Length: 291)

Name: NF12714_low_8
Description: NF12714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12714_low_8
NF12714_low_8
[»] chr5 (10 HSPs)
chr5 (8-274)||(13426027-13426293)
chr5 (10-276)||(13419135-13419400)
chr5 (8-276)||(13446681-13446953)
chr5 (10-119)||(13412946-13413055)
chr5 (10-150)||(13453764-13453904)
chr5 (8-150)||(13385524-13385666)
chr5 (8-113)||(13373039-13373144)
chr5 (8-107)||(13389345-13389444)
chr5 (31-119)||(13393775-13393863)
chr5 (8-113)||(13378835-13378940)
[»] chr8 (1 HSPs)
chr8 (8-151)||(28430728-28430871)
[»] chr4 (1 HSPs)
chr4 (31-152)||(47601080-47601201)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 13426293 - 13426027
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13426293 gtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 13426194  T
Q  108 tgactcgtttctagtaagccgtgatccagatcagatgcaggtatatgattcatttgattgatttgtgaatttcattatttcagaaatcgagaatgttaat 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13426193 tgactcgtttctagtaagccgcgatccagatcagatgcaggtatatgattcatttgattgatttgcgaatttcattatttcagaaatcgagaatgttaat 13426094  T
Q  208 caagaaactaatattgtacaacattttaataggctgcaatgggtactttgaatggtattatcgacac 274  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13426093 caagaaactaatattgtacaacgttttaataggctgcaatgggtactttgaatggtattatcgacac 13426027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 13419400 - 13419135
Alignment:
Q  10 catatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctg 109  Q
    |||||||| |||||||| || |||||||| ||||||||||| || ||||||||||||||||||  ||||||||||||||| |||||||| || |||||||    
T  13419400 catatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttgggagctg 13419301  T
Q  110 actcgtttctagtaagccgtgatccagatcagatgcaggtatatgattcatttgattgatttgtgaatttcattatttcagaaatcgagaatgttaatca 209  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||| |  |||| ||||||    
T  13419300 actcgtttctagtaagccgcgatcctgatcagatgcaggtatatgattcatttgattcatttgtgaattaaaatattttagaaattggcaatggtaatca 13419201  T
Q  210 agaaactaatattgtacaacattttaataggctgcaatgggtactttgaatggtattatcgacacag 276  Q
    | ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||    
T  13419200 ataaactaatattgtacaaca-tttcatagactgcaatgggtactttgaatggtattattgacacag 13419135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 13446953 - 13446681
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||||||||| |||||||| || ||||||||||||||||| || || ||||||||||| |||||||  || ||||||||||| |||||||| ||||||||    
T  13446953 gtcatatggctgtgaaatttgctaaagcttttggtgctaaagtgaccgtaattagtacgtcgcctaaaaaggaaaaggaagcaatagaacacttaggagc 13446854  T
Q  108 tgactcgtttctagtaagccgtgatccagatcagatgcaggtatatgattcatttgattgatttgtgaa-tttcattatttcagaaatcgagaatg---- 202  Q
     |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| || ||||        
T  13446853 agactcgtttctagtaagccgcgatccagaacagatgcaggtatatgattcatttgattaatttctgaattttcattatttcagaaattgataatgttaa 13446754  T
Q  203 ttaatcaagaaactaatattgtacaacattttaataggctgcaatgggtactttgaatggtattatcgacacag 276  Q
    |||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||||||| ||||| |||||||    
T  13446753 ttaatcaagaaactaataatgtacaacatttt-ataggctgcaacgagtactttgaatggcattattgacacag 13446681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 13413055 - 13412946
Alignment:
Q  10 catatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctg 109  Q
    |||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  13413055 catatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagcaatagaacacttaggagctg 13412956  T
Q  110 actcgtttct 119  Q
    | || |||||    
T  13412955 attcatttct 13412946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 13453904 - 13453764
Alignment:
Q  10 catatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctg 109  Q
    |||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||  || |||||||||||  ||||||| ||| |||| |    
T  13453904 catatggccgtgaaattcgccaaagctttcggtgctaatgtgaccgtaattagtacatcacctaaaaaggaaaaggaagcattagaacacttacgagcgg 13453805  T
Q  110 actcgtttctagtaagccgtgatccagatcagatgcaggta 150  Q
    |||| |||||| |||||||||||||| | |||||| |||||    
T  13453804 actcatttctaataagccgtgatccaaagcagatgaaggta 13453764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 13385524 - 13385666
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||| | |||||| ||||||||    
T  13385524 gtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagcaaaagaacacttaggagc 13385623  T
Q  108 tgactcgtttctagtaagccgtgatccagatcagatgcaggta 150  Q
    ||| || |||||  |||| ||||| | |||| | |||||||||    
T  13385624 tgattcatttctgataagtcgtgaccaagataaaatgcaggta 13385666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 13373144 - 13373039
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||| || || || || |||| |||| | |||||||| || ||||| ||||||||    
T  13373144 gtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggagc 13373045  T
Q  108 tgactc 113  Q
    ||||||    
T  13373044 tgactc 13373039  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 13389345 - 13389444
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||| ||||| |||||||| |||||||| |||||||| | ||||||||| ||||||||||| || | |||||| || ||||| |||||||| ||||||||    
T  13389345 gtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagcaatagaacacttaggagc 13389444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 13393775 - 13393863
Alignment:
Q  31 aaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctgactcgtttct 119  Q
    ||||||||||| |||||||||||||||||||||||||| || | |||||| || ||||| |||||| |  |||||||||| || |||||    
T  13393775 aaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaacctaggagctgattcatttct 13393863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 13378940 - 13378835
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||||||||| ||||| ||||||||||| ||||||| ||| ||||| ||  | ||||| || |||| |||| | |||||||| || ||||  ||||||||    
T  13378940 gtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggagc 13378841  T
Q  108 tgactc 113  Q
    ||||||    
T  13378840 tgactc 13378835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 28430728 - 28430871
Alignment:
Q  8 gtcatatggcagtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagc 107  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | |||||||| || |||| | | |||||    
T  28430728 gtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggagc 28430827  T
Q  108 tgactcgtttctagtaagccgtgatccagatcagatgcaggtat 151  Q
    |||||| ||| | || ||| |||| | |||||| ||||||||||    
T  28430828 tgactcatttgtggttagcagtgaacaagatcaaatgcaggtat 28430871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 47601201 - 47601080
Alignment:
Q  31 aaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacatttaggagctgactcgtttctagtaagccgtg 130  Q
    ||||||||||| |||||||| || |||||||||||||| |||| ||||||||| ||||| | ||||   |||||||||||||| ||| |  |||| ||||    
T  47601201 aaagcttttggggctaatgtgactgtaattagtacatcacctaacaaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtg 47601102  T
Q  131 atccagatcagatgcaggtata 152  Q
    | | |||| ||||||| |||||    
T  47601101 accaagataagatgcaagtata 47601080  T

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