View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12715_high_11 (Length: 497)
Name: NF12715_high_11
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 18029776 - 18029306
Alignment:
| Q |
11 |
gaagcaaaggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18029776 |
gaagcaaaggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttggctgttacgtgctgaatctctattacattctat |
18029677 |
T |
|
| Q |
111 |
tcctggggtaaatcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccattaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18029676 |
tcctggggtaaatcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccatcaa |
18029577 |
T |
|
| Q |
211 |
atgattagaaactttgcgaatatatatgnnnnnnngtgtcctgcatggatgatgtccgacacgacaatgacacgctatgtagcattgacacat--acata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18029576 |
atgattagaaactttgcgaatatatatgtttttttgtgtcctgcatgtatgatgtccgacaggacaatgacacgctatgtagcattgacacatacacata |
18029477 |
T |
|
| Q |
309 |
gacatgacattgacttgtcggcactcataataatatgagaaaatgatataatagaatttaatcacacgtgtcattgtcgtgtcagaaacaaaacttgcct |
408 |
Q |
| |
|
|| |||||||||||||||| ||| | |||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18029476 |
gatatgacattgacttgtcagcattgataataatatgagataatgatatagttgaatttaatcacatgtgtcattgtcgtgtcagaaacaaaacttgcct |
18029377 |
T |
|
| Q |
409 |
tctgatacaagtgactacattcaattacttcgatttgctaatattattattggtgtctacgtgtcgtgtgt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18029376 |
tctgatacaagtgactacattcaattacttcaattttctaatattattattggtgtctacgtgtcgtgtgt |
18029306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 18035788 - 18035585
Alignment:
| Q |
22 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctggggtaa |
121 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| | | |
|
|
| T |
18035788 |
cactcaatgaattttgacccagaaatgtccgcacacatgtaaacttgataaagctggctgtttcgtgctgaatctctattacactctattcctggtgaat |
18035689 |
T |
|
| Q |
122 |
atcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccattaaatgattagaaa |
221 |
Q |
| |
|
| |||||| ||| || |||||| ||| | || || || || ||||||||| | || ||||||||| ||||||||||| | | |||||||||||||||| |
|
|
| T |
18035688 |
accctgtagcctgttgtatagcatctaaaatattacctgtgttgtaaaatttgttatctggttcaatacctgaaattcaatgcaattaaatgattagaaa |
18035589 |
T |
|
| Q |
222 |
cttt |
225 |
Q |
| |
|
|||| |
|
|
| T |
18035588 |
cttt |
18035585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 18048111 - 18048016
Alignment:
| Q |
22 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
18048111 |
cactcaatgaaatttgacccagaagtatccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctggg |
18048016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 18053022 - 18052842
Alignment:
| Q |
22 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctggggtaa |
121 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||||||| ||||||||| || |
|
|
| T |
18053022 |
cactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctgggagaa |
18052923 |
T |
|
| Q |
122 |
atcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcatt |
202 |
Q |
| |
|
| |||||| | |||| |||| | | |||| ||||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
18052922 |
accctgtagcgtcttctataatgcttaaagggtttcctatgtcgtaaaattgatcatttggttcaaatcctgaaattcatt |
18052842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 18000169 - 18000104
Alignment:
| Q |
18 |
aggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgtt |
83 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18000169 |
aggacagtcaatgaagtttgatccagaagtgtccacacacaaataaacttgatatagttgactgtt |
18000104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 18007190 - 18007132
Alignment:
| Q |
25 |
tcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgtt |
83 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
18007190 |
tcaatgaagtctgatccagaagtgtccacacacaagtaaacttgataaagttggctgtt |
18007132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 31586329 - 31586284
Alignment:
| Q |
335 |
ataataatatgagaaaatgatataatagaatttaatcacacgtgtc |
380 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31586329 |
ataataatttgagaaaatgatataatataatgtaatcacacgtgtc |
31586284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 19323511 - 19323443
Alignment:
| Q |
324 |
tgtcggcactcataataatatgagaaaatgatataatagaatttaatcacacgtgtcattgtcgtgtca |
392 |
Q |
| |
|
||||| |||| ||| |||| ||||||||||| ||||| ||||||||||||| |||| | ||||| |||| |
|
|
| T |
19323511 |
tgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtgtaagtgtcgcgtca |
19323443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 43328469 - 43328529
Alignment:
| Q |
330 |
cactcataataatatgagaaaatgatataatagaatttaatcacacgtgtcattgtcgtgt |
390 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| ||| ||| |||| ||||||||||||||| |
|
|
| T |
43328469 |
cacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgt |
43328529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University