View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_13 (Length: 457)
Name: NF12715_high_13
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_13 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 337069 - 337495
Alignment:
| Q |
18 |
tttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaatgtaaaagataaggtatcccttctgaattctgatctactc |
117 |
Q |
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| T |
337069 |
tttggagccaaaactccctcatcttcctggaattgctccttatagaattgtccttgggaatgtaaaagataaggtatcccttctgaattctgatctactc |
337168 |
T |
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| Q |
118 |
taataatatatgttaactggatctgcatgtatggacactagtatttcatttctacatttgcttttgatgtgctgtaatgagtgattcatatctaaacatt |
217 |
Q |
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| T |
337169 |
taataatatatgttaactggatctgcatgtatggacactagtatttcatttctacatttgcttttgatgtgctgtagtgagtgattcatatctaaacatt |
337268 |
T |
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| Q |
218 |
ttactgaacaattttgttttccttgttgtcctatgaattggtaatgttaaattgtcaatcaaaggcacgatagtaaatgcattctcttctgtgcacatgt |
317 |
Q |
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| T |
337269 |
ttactgaacaaactagttttctttgttgtcctatgaattggtaatgttaaattgtcaatcaaaggcacgatagtaaatgcattctcttctgtgcacatgt |
337368 |
T |
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| Q |
318 |
ttagctacagagaactcgtagacgattggaactgcttctagaggattgtccatgtgaacttgatccttctgattactatgaaacaaccgaccagcttttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
337369 |
ttagctacagagaactcgtagacgattggaactgcttctagaggattgtccatgtgaacttgatccttctgattactatgaaacaaccgaacagcttttg |
337468 |
T |
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| Q |
418 |
gaacctctgctcctctgttatgaatct |
444 |
Q |
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| T |
337469 |
gaacctctgctcctctgttatgaatct |
337495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 42172524 - 42172600
Alignment:
| Q |
18 |
tttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaatgtaaaagataaggtat |
94 |
Q |
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| T |
42172524 |
tttggagccacagctccctcaacttcctggaattgctccttatagagttgtcctgggaaatgtaaaggataaggtat |
42172600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 447
Target Start/End: Original strand, 42173073 - 42173186
Alignment:
| Q |
334 |
cgtagacgattggaactgcttctagaggattgtccatgtgaacttgatccttctgattactatgaaacaaccgaccagcttttggaacctctgctcctct |
433 |
Q |
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| T |
42173073 |
cgtagacggttagaacttcttcttgaggatgttgcatgtgactatgatcctttggattattatgaaacagctgaccagcttttggatcctctgctcctca |
42173172 |
T |
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| Q |
434 |
gttatgaatctctg |
447 |
Q |
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|||||||||||||| |
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| T |
42173173 |
gttatgaatctctg |
42173186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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