View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12715_high_14 (Length: 438)
Name: NF12715_high_14
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 34895409 - 34895108
Alignment:
| Q |
7 |
gagagaagaatttggtgagattatgacatcaaatgagaaaatcagatctatgcttgaagaatcgcgttatgttccagaatgcaacgtcagcccagaaaat |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
34895409 |
gagaaaagaatttggtgagattatgacatcaaatgagaaaatcagatctatgcttgaagaatcgcgttatgttccagaatgcaatgtcagcccagacaat |
34895310 |
T |
|
| Q |
107 |
ttagtccttgaaaaccaagaggcttcatttttgcttattacaaacagaagtacaaatgataaggttgtatacaagatcacttgtgatggccagtctacag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34895309 |
ttagtccttgaaaaccaagaggcttcatttttgcttattacaaacagaagtacaaatgataaggctgtatacaagatcacttgtgatggccagtctacag |
34895210 |
T |
|
| Q |
207 |
tcaagaatgacggcgaagcacctgattataccccaagagctgcctttggatttcctagatggcttgaggtactatacctttacttaaatactcatatgct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34895209 |
tcaagaatgacggcgaagcacctgattataccccaagaggtgcctttggatttcctagatggcttgaggtactatacctttacttaaacactcatatgct |
34895110 |
T |
|
| Q |
307 |
at |
308 |
Q |
| |
|
|| |
|
|
| T |
34895109 |
at |
34895108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 298 - 421
Target Start/End: Complemental strand, 34894964 - 34894841
Alignment:
| Q |
298 |
tcatatgctattttgaactttgagggtcggcaagaaatattagttacatgtaaatcttactgcatgtgcaacgtttttctggcttatcttattcttttaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894964 |
tcatatgctattttgaactttgagggtcggcaagaaatattagttacatgtaaatcttactgcatgtgcaacgtttttctggcttatcttattcttttaa |
34894865 |
T |
|
| Q |
398 |
aatgaagtcaacaattttcaaaat |
421 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34894864 |
aatgaagtcaacaattttcaaaat |
34894841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University