View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_17 (Length: 399)
Name: NF12715_high_17
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 40925045 - 40925410
Alignment:
| Q |
1 |
agagagaatggattgagagaaggcttaaagagaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaat |
100 |
Q |
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| T |
40925045 |
agagagaatggattgagagaaggcttaaa-agaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaat |
40925143 |
T |
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| Q |
101 |
gaatcaatttacaaaggaatgaatgttgtttatgcggtgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgcttt |
200 |
Q |
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| T |
40925144 |
gaatcaatttacaaaggaatgaatgttgtttatgcgctgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgcttt |
40925243 |
T |
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| Q |
201 |
tcttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacataa |
300 |
Q |
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| T |
40925244 |
tcttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacataa |
40925343 |
T |
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| Q |
301 |
aaatcatttatttattattgattttcacattgggaaacagtaatgaacgcaatgaacgtgtgtttca |
367 |
Q |
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| T |
40925344 |
aaatcatttatttattattgattttcacattgggaaacagtaatgaacgcaatgaacgtgtgtttca |
40925410 |
T |
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