View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_19 (Length: 389)
Name: NF12715_high_19
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 11040499 - 11040148
Alignment:
| Q |
17 |
ataatgtaatgcactatataaatttaaataataattttttcaaagggaacacattgaaggcataaaacaacccctcaaagtcaggttctcatcagttggc |
116 |
Q |
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| T |
11040499 |
ataatgtaatgcactatataaatttaa-taataattttttcagaggtaacacattgaaggcataaaacaacccctcaaagtcaggttctcatcagttggc |
11040401 |
T |
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| Q |
117 |
aatttatcgtgcattaacctccaaaacaatagggatttggagggtggaatgtcctttgaccaggtaggttttgtctaagtgagttttggaaaatgatgtc |
216 |
Q |
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| T |
11040400 |
aatttgtcgtgcattaacctccacaacaatagggatttggagggtgaaatgtcctttgaccaggtaggttttgtccaagtgagttttggaaaatgatgtc |
11040301 |
T |
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| Q |
217 |
ttttaaaatcaaaagcatccttaagagttagaatatcagaactgttatatatgcttccacattaaactgttgggtttgtcaagcaatgagatagtaactt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
11040300 |
ttttaaaatcaaaagcatccttaagagttagaataccagaactgt----tatgcttccacattaaactgtcgggtttgtcaagcaatgggatagtaactt |
11040205 |
T |
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| Q |
317 |
gtgacacaagtcttctgatatcagaaaatctttgctccagagattcaagcttccagt |
373 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11040204 |
gtgacacaagtcttctgatatcaggaaatctttgctccagagattcaagcttccagt |
11040148 |
T |
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