View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_23 (Length: 327)
Name: NF12715_high_23
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 31737591 - 31737884
Alignment:
| Q |
17 |
cacaatggccttcctcacatccgaaggcaaagtaacccaaccatcatccacctttaagaccttaatagaatttctcgaccctcttgattttatacaatta |
116 |
Q |
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| T |
31737591 |
cacaacggccttcctcacatccgaaggcaaagtaacccaaccatcatccacctttaaggccttaatagaatttctcgaccctcttgattttatacaatta |
31737690 |
T |
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| Q |
117 |
tgaaaaaatctagaattaacatcaccttccttaggccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataactcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31737691 |
tgaaaaaatctagaattaacatcaccttccttaggccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataactcac |
31737790 |
T |
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| Q |
217 |
taaacttatccttccgaataagaatttccgcatcactcaaaccaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31737791 |
taaacttatccttccgaataagaatttccgcatcactcaaactaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctc |
31737884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 8247596 - 8247754
Alignment:
| Q |
151 |
gccatttagatcttgacctttgcaccgccatcgcatctttcgccttaagaagcctccataactcactaaacttatccttccgaataagaatttccgcatc |
250 |
Q |
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|||||||||||| ||||| || ||| || || ||||||| ||||||||||||||||||| |||| ||||||||| || ||| |||||||| || |
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| T |
8247596 |
gccatttagatcgtgaccattttaccaccttcacatctttagccttaagaagcctccatagttcacaaaacttatctttacgacctcgaatttccatgtc |
8247695 |
T |
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| Q |
251 |
actcaaaccaccttcctcccccttctcatcaagcccattaatatcctccatcaacttctc |
310 |
Q |
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|||||| |||| |||| ||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
8247696 |
actcaacccactttcc-ccccctttacatcaagccccttaatatcctccatcaacttctc |
8247754 |
T |
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