View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_27 (Length: 322)
Name: NF12715_high_27
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 31 - 306
Target Start/End: Complemental strand, 5127843 - 5127568
Alignment:
| Q |
31 |
ttggagacaagagttaggtcagatttcttacgcaatgaagatgatgacatgttatgtgctgttctaccatgtttcatagtttctttgctcacaattcctt |
130 |
Q |
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| T |
5127843 |
ttggagacaagagttaggtcagatttcttacgcaatgaagatgatgacatgttatgtgctgttctaccatgtttcatagtttctttgctcacaattcctt |
5127744 |
T |
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| Q |
131 |
taatgtttcctccattctctaagaaacatgcttcaaactcataatcatgatgatgagaatccatttttcaaatgatgaagaagaaaatctatgttggtag |
230 |
Q |
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| T |
5127743 |
taatgtttcctccattctctaagaaacatgcttcaaactcataatcatgatgatgagaatccatttttcaaatgatgaagatgaaaatctatgttggtag |
5127644 |
T |
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| Q |
231 |
tgttgttgtgaaataatatacgacaaaaaagaggcactaagatatatgttacagttgcaatgtggcatgttacatg |
306 |
Q |
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| T |
5127643 |
tgttgttgtgaaataatatacgacaaaaaagaggcactaagatatatgttacaattgcaatgtggcatgttacatg |
5127568 |
T |
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