View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_32 (Length: 247)
Name: NF12715_high_32
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 39314334 - 39314198
Alignment:
| Q |
6 |
agagatgaatggtttggaagactccgagctcaagttttagagatgaaataattattagtcaaactataattaccaccacactgttgaaactatcaagact |
105 |
Q |
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| T |
39314334 |
agagataaatggtttggaagactccgaactcaagttttaga--tgaaataattattagtcaaactatatttaccaccacacggttgaaactatcaagact |
39314237 |
T |
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| Q |
106 |
ctcttcccttttggaattaaaggattactatcaacagaac |
145 |
Q |
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| T |
39314236 |
ctcttccc-tttggaattaaaggattactatcaacagaac |
39314198 |
T |
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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 39314152 - 39314088
Alignment:
| Q |
183 |
ctttctttcactgactgttttgcagaaaaaggtaaattcaacgttacatgctacatatatagttt |
247 |
Q |
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| T |
39314152 |
ctttctatcactgattgttttgcagaaaaaggtaaatacaacgttaaatgctacatatatagttt |
39314088 |
T |
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