View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12715_high_4 (Length: 772)

Name: NF12715_high_4
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12715_high_4
NF12715_high_4
[»] chr5 (1 HSPs)
chr5 (17-754)||(2223111-2223836)


Alignment Details
Target: chr5 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 17 - 754
Target Start/End: Complemental strand, 2223836 - 2223111
Alignment:
Q  17 agttgcgagtactcctaaaacacgattcccattccaatcaatcactcttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2223836 agttgcgagtactcctaaaacacgattcccattccaatcaatcactcttccacctgctgcttcaatcctttctctttcatccggaagatctggctgatcg 2223737  T
Q  117 atcatcattaaataataataattcagccaaaacaaagtgtttgatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattnnnnn 216  Q
    |||||||||||||||||||||||           || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  2223736 atcatcattaaataataataatt-----------aattgttggatatggtaccaaaagcagttcaaataccataaatgtattttgcttcttaattaaaaa 2223648  T
Q  217 nnnnncaaactattattctagttaattacttgttagataagcaatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtg 316  Q
         ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2223647 aaaaacaaaccattattctatttaattacttgttagataagcaatatgcatatatacatgtatgatatatgactaactaaactaattaaccaattcggtg 2223548  T
Q  317 tacatattttctttatgagaattaagtgtacatgtttagtttgcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttat 416  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2223547 tacatattttctttatgagaattaagtgtacatgtttagtt-gcttaattgtaagtttctttatatctcatgagtcaccattaattaaccatcaccttat 2223449  T
Q  417 gatctcgtgaaagtggcaccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccac 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2223448 gatctcgtgaaagtggcaccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcctccttccccaccaccaccac 2223349  T
Q  517 agccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcataaaacaagaacacatagct 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2223348 agccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcataaaacaagaacacatagct 2223249  T
Q  617 tcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagcattcgccaccgtcataccac 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2223248 tcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagcattcgccaccgtcataccac 2223149  T
Q  717 catgaccgtcataaaccgcaaagaaatcataaccgcac 754  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2223148 catgaccgtcataaaccgcaaagaaatcataaccgcac 2223111  T

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