View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_high_9 (Length: 511)
Name: NF12715_high_9
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Original strand, 7472974 - 7473456
Alignment:
| Q |
14 |
agacgagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgcta--atgaaacgaagtcgtaagc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7472974 |
agacgagattggtaatttttgtctctctttctcatgtaggtattgttatgtttaaatttgaatatagatacctttgctataatgaaacgaagtcgtaagc |
7473073 |
T |
|
| Q |
112 |
tacaggtcatttgttagttagtacatttttacgggcatatcattggtaattaataccctcacttcaataaatttgaactagcaacccaataagatctgat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7473074 |
tacaggtcatttgttagttagtacatttttacgggcatatcattggtaattaataccctcacttcaataaatttgaactagcaacccaataagatctgat |
7473173 |
T |
|
| Q |
212 |
cagtttagaaaccagtctagattataagccattttatggagaaaatcagtatgtagctcataagttgcaataaagttggtataagctacaagtcatacgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7473174 |
cagtttagaaaccagtctagattataagccattttatggagaaaatcagtatgtagctcataagttgcaataaagttggtataagctacaagtcatacgt |
7473273 |
T |
|
| Q |
312 |
tttaaatgtggttttaaaattgaagtttatgaggcttctttgcatataggtatcacaaaatgttgaactattctgaatgattggttaatgtatgtataaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7473274 |
tttaaatgtggttttaaaattgaagtttatgaggcttctatgcatataggtatcacaaaatgttgaactattctgaatgattggttaatgtatgtataaa |
7473373 |
T |
|
| Q |
412 |
aacttgataccttaagttttgttattgataccctaagttttgctaattgtatatcttcagatgttagcaaggaaaatagtttt |
494 |
Q |
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| T |
7473374 |
aacttgataccctaagttttgttattgataccctaagttttgctgattgcatatcttcagatgttagcaaggaaaatagtttt |
7473456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 188 - 319
Target Start/End: Original strand, 22484622 - 22484751
Alignment:
| Q |
188 |
actagcaacccaataagatctgatcagtttagaaaccagtctagattataagccattttatggagaaaatcagtatgtagctcataagttgcaataaagt |
287 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || ||| ||||||| ||||||| | ||||||||||||||||| ||||||||||||||| |||| |
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| T |
22484622 |
actagcaacccaataagatttgatcagtttggaaat-ag-ctatattataaaccattttctagagaaaatcagtatgtaactcataagttgcaattaagt |
22484719 |
T |
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| Q |
288 |
tggtataagctacaagtcatacgttttaaatg |
319 |
Q |
| |
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||||| |||| ||| ||||||| ||||||||| |
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| T |
22484720 |
tggtacaagccacaggtcatacattttaaatg |
22484751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 5367863 - 5367752
Alignment:
| Q |
119 |
catttgttagttagtacatttttacgggcatatcattggtaattaataccctcacttcaataaatttgaactagcaacccaataagatctgatcagttta |
218 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |||||||||| | || |||||| |
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| T |
5367863 |
catttgttagttagtactttttta-gggcatatcattagtaattaatcccctcactttaataaatttgaactagcaatccaataagattttataagttta |
5367765 |
T |
|
| Q |
219 |
gaaaccagtctag |
231 |
Q |
| |
|
||| ||||||| |
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|
| T |
5367764 |
taaaatagtctag |
5367752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 5368032 - 5367959
Alignment:
| Q |
18 |
gagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgct |
91 |
Q |
| |
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|||||||| || |||||||||||||| |||||| ||| | |||||||||||||||||||||| ||||| |||| |
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|
| T |
5368032 |
gagattggcaagctttgtctctctttcacatgtaagtactattatggttaaatttgaatataggtacctctgct |
5367959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 18927821 - 18927731
Alignment:
| Q |
218 |
agaaaccagtctagattataagccattttatggagaaaatcagtatgtagctcataagttgcaataaagttggtataagctacaagtcata |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| |||||||| || |||||||||||| ||||||||| ||| |||||||||| |
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| T |
18927821 |
agaaaccagtctagattataagctattttctggagaaaattagtatgtatcttataagttgcaattaagttggtagaagtcacaagtcata |
18927731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 18924754 - 18924683
Alignment:
| Q |
144 |
gggcatatcattggtaattaataccctcacttcaataaatttgaactagcaacccaataagatctgatcagt |
215 |
Q |
| |
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|||||||||| | ||||||||| || |||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
18924754 |
gggcatatcactagtaattaatcccttcacttcaataaatttgaactagcaacctaataagatttgatcagt |
18924683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 20451734 - 20451661
Alignment:
| Q |
18 |
gagattggtaatttttgtctctctttctcatgtaggtattgttatggttaaatttgaatatagatacctttgct |
91 |
Q |
| |
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|||||||| || ||||||||| |||| |||||| ||| | |||||||||||||||||||||| ||||| |||| |
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|
| T |
20451734 |
gagattggcaagctttgtctctttttcacatgtaagtactattatggttaaatttgaatataggtacctctgct |
20451661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 34482462 - 34482420
Alignment:
| Q |
452 |
tgctaattgtatatcttcagatgttagcaaggaaaatagtttt |
494 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| |||||||| |
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| T |
34482462 |
tgctgattgtatatcttcagatggtagcaaggaagatagtttt |
34482420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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