View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_1 (Length: 968)
Name: NF12715_low_1
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 692
Target Start/End: Complemental strand, 26008448 - 26007767
Alignment:
| Q |
14 |
cagagacatgtggttccaacaagctatctttctcaccctttattcaagatgttgttggagaagtcatacaatgagtttggatttgagcagaggaatggct |
113 |
Q |
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| T |
26008448 |
cagagacatgtggttccaacaagctatctttctcaccctttattcaagatgttgttggagaagtcatacaatgagtttggatttgagcagaggaatggct |
26008349 |
T |
|
| Q |
114 |
tggtagttccatgtagtgtttccacatttcaagaggttgtaaatgctattgaatgtaacaatggcaagtttcacttaggcaagatttttcaagattttgt |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008348 |
tggtagttccatgtagtgtttcaacatttcaagaggttgtaaatgctattgaatgtaacaatggcaagtttcacttaggcaagatttttcaagattttgt |
26008249 |
T |
|
| Q |
214 |
ttgaagtgttgaaaaatagatgtagtccttgtttcatttttattggttaatgttacaatgcattggaagtatcacctctcttggtgcatttgtgggtgtg |
313 |
Q |
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| T |
26008248 |
ttgaagtgttgaaaagtagatgtagtccttgtttcatttttattggttaatgttacaatgcattggaagtatcacctctcttggtgcatttctgggtgtg |
26008149 |
T |
|
| Q |
314 |
gaaatggagagaatccaaatcaccatttactctcaatcttctctttctttttgctagnnnnnnngttgagacttgagacacacactacaacaaagaatct |
413 |
Q |
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| T |
26008148 |
gaaatggagagaatccaagtcaccatttactctcaatcttctctttctttttgctagtttttttgttgagacttgagacacacactacaacaaagaatcc |
26008049 |
T |
|
| Q |
414 |
aattgggcttagagatgacaagaatttagatcatcaacatcaatacacggtgcagcggattaggaaaccgtttatc-gaatccataagtaatttatattt |
512 |
Q |
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| T |
26008048 |
aattgggcttatagatgacatggatttagatcatcaacatcaataca-agtgcagcggactaggaaaccgtttatctgaatccataagtaatttatatct |
26007950 |
T |
|
| Q |
513 |
agatcgaacgactctacaacctactacaacgta---caatggtagtagatcaaaactcgaatatcttagtgacctttaatttctatcgaagctattgtta |
609 |
Q |
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||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
26007949 |
agatcgaacgactctacaacccactacaatgcacatcaacggtagtagatcaaaactcgaatatcttagtgacatttaatttctatcgaagctattgcta |
26007850 |
T |
|
| Q |
610 |
caagcattttgtcaattagaattaatttgacatgtacataattcatggtcatagtgatattttccatattggtcaacttatgc |
692 |
Q |
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| T |
26007849 |
caagcattttgtcaattagaattaatttgacatgtaaataattcatggtcatagtgatcttttccatattggtcaacttatgc |
26007767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 724 - 949
Target Start/End: Complemental strand, 26007736 - 26007509
Alignment:
| Q |
724 |
cccgtatactgtttagcaaacatgccccctaacttttacaattgtcattaagtgccgcaaaagtgacctcagt---tagtggcagaaattgggcacattc |
820 |
Q |
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| T |
26007736 |
cccgtatactgtttagcaaacatgctccctaacttttacaattgtcattaagtgccgcaaaagtgacctcagtaattagtggcagaaattgggcacattc |
26007637 |
T |
|
| Q |
821 |
aattagtcaactagtgtcttacttgaatttgtaatgcatagatttggcaaaaatgtctatacctataataagttcacatgtagcactnnnnnnncttatc |
920 |
Q |
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| T |
26007636 |
aattagtcaactagtgtcttacttgaatttgtaatgcatagatttggcaaaaatgtctatacctataataagttcacatgtagcactaaaaaaa-ttatc |
26007538 |
T |
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| Q |
921 |
tagcaccgaaaatttcacaagtgtattag |
949 |
Q |
| |
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| T |
26007537 |
tagcaccgaaaatttcgcatgtgtattag |
26007509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 42551989 - 42552120
Alignment:
| Q |
53 |
ttattcaagatgttgttggagaagtcatacaatgagtttggatttgagcagaggaatggcttggtagttccatgtagtgtttccacatttcaagaggttg |
152 |
Q |
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| T |
42551989 |
ttattcaagatgttgttggagaaagcatacaatgaatttggatttgaacagaggaatggcttggtagttccatgtagtgtttcagcatttcatgaagtgg |
42552088 |
T |
|
| Q |
153 |
taaatgctattgaatgtaacaatggcaagttt |
184 |
Q |
| |
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| T |
42552089 |
ttaatgctatagaatgtaacaattgtaagttt |
42552120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 42547703 - 42547866
Alignment:
| Q |
21 |
atgtggttccaacaagctatctttctcaccctttattcaagatgttgttggagaagtcatacaatgagtttggatttgagcagaggaatggcttggtagt |
120 |
Q |
| |
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||||||||||||| || || || || || || |||||||| |||||||||||||| |||||||||| ||||| ||||| |||| ||||||||||||||| |
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| T |
42547703 |
atgtggttccaaccaggtacctctcacatccattattcaaaatgttgttggagaaagcatacaatgaatttgggtttgaacagaagaatggcttggtagt |
42547802 |
T |
|
| Q |
121 |
tccatgtagtgtttccacatttcaagaggttgtaaatgctattgaatgtaacaatggcaagttt |
184 |
Q |
| |
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||||||||||||||| |||||||||||||||| || ||||| |||||||| ||| | |||||| |
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| T |
42547803 |
tccatgtagtgtttcagcatttcaagaggttgttaaggctatagaatgtaataattgtaagttt |
42547866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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