View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_11 (Length: 498)
Name: NF12715_low_11
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 36260166 - 36260639
Alignment:
| Q |
16 |
aaacaatcacctcttttcaaatgagagagatagcatatatgcactttcttaatttaatcttatattgatatttcgaaatttcttagaactatatgtgtat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36260166 |
aaacaatcacctcttttcaaatgagagagatagcatatatgcactttcttaatttaatcttatattgatatttcgaaatttcatagaactatatgtgtat |
36260265 |
T |
|
| Q |
116 |
tatttttaacaatacgcaannnnnnnnnnnnnnnnaaacatatactagaaccaaagtgacctatgagaaagcacaaatacctttctagtaatcnnnnnnn |
215 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260266 |
tatttttaac--tacgcaatttttatttttattttaaacatatactagaaccaaagtgacctatgagaaagcacaaatacctttctagtaatcttttttt |
36260363 |
T |
|
| Q |
216 |
n---cctttcttacgtcactaaacaagcacaccccaatttacctctcaataggtgttgatggctcattctcaccattagccaaattgttactatacaata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260364 |
ttttcctttcttacgtcactaaacaagcacaccccaatttacctctcaataggtgttgatggctcattctcaccattagccaaattgttactatacaata |
36260463 |
T |
|
| Q |
313 |
tattgaatctaatcaagctctttttgttcttcatatatttatcttgtcccataatcattataaatagcttcttattaaattcataatgaactacaattaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260464 |
tattgaatctaatcaagctctttttgttcttcatatatttatcttgtcccataatcattataaatagcttcttattaaattcataatgaactacaattaa |
36260563 |
T |
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| Q |
413 |
actcttagttaattaaggatgaaaactaagccttgtacatttgtgttctttctttgtgaactaattataatctctg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36260564 |
actcttagttaattaaggatgaaaactaagccttgtacatttgtgttctttctttgtgaaataattataatctctg |
36260639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 34949344 - 34949287
Alignment:
| Q |
257 |
ctcaataggtgttgatggctcatt-ctcac-cattagccaaattgttactatacaata |
312 |
Q |
| |
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|||||||||||||||||||||||| ||| | ||| ||||||||| ||||||||||||| |
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| T |
34949344 |
ctcaataggtgttgatggctcattactctcacataagccaaatttttactatacaata |
34949287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 36272887 - 36272854
Alignment:
| Q |
282 |
tcaccattagccaaattgttactatacaatatat |
315 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
36272887 |
tcacgattagccaaattgttactatacaatatat |
36272854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 24895515 - 24895479
Alignment:
| Q |
342 |
ttcatatatttatcttgtcccataatcattataaata |
378 |
Q |
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||||||||||||||||||||||| |||| |||||||| |
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|
| T |
24895515 |
ttcatatatttatcttgtcccatgatcactataaata |
24895479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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