View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_13 (Length: 491)
Name: NF12715_low_13
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 43439547 - 43440007
Alignment:
| Q |
19 |
tgtaattggtgtgtaaatacgtgaagaaggttataatatcattgagttagtgttgttcatagagttgtaaaaccagaaagcattttgcttggtcaacctg |
118 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439547 |
tgtaattggtgtgtaaatacttgaagaaggttatagtatcattgagttagtgttgttcatagagttgtaaaaccagaaagcattttgcttggtcaacctg |
43439646 |
T |
|
| Q |
119 |
gaacaactgatctcataacattgatcttgtcaggccagttagctttgttttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||| |
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| T |
43439647 |
gaacaactgatctcataacattgatcttgtcaggcccgttatctttgttttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgt |
43439745 |
T |
|
| Q |
219 |
cgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcatttcatggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatt |
318 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
43439746 |
cgcgtcattttctgctctcaggcctgatcagcaagcttgtctgcacttcatgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatt |
43439845 |
T |
|
| Q |
319 |
tatagacattgtaagctggaaatagttggttcagtgttaattgtgcttaaacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattg |
418 |
Q |
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||||||| |||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| ||| |
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| T |
43439846 |
tatagacgttgtaagccagcaataattggttcagtgttaattgtgcttaaacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttg |
43439945 |
T |
|
| Q |
419 |
agttatggaatggaacaaatataaagtatcacaaaaattcattttaaggctccttccttcat |
480 |
Q |
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| T |
43439946 |
agttatggaatggaacaaatataaagtatcacaagaactcattttaaggctccttccttcat |
43440007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 74 - 480
Target Start/End: Original strand, 43742134 - 43742539
Alignment:
| Q |
74 |
ttcatagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacattgatcttgtcaggccagttagctttgttttcaca |
173 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
43742134 |
ttcatagagttgtaaaaccagaaagcatttttcttggtcaacctggaacaactgatctcataacattgatcttgtcaggcccgttatctttgttttcaca |
43742233 |
T |
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| Q |
174 |
taaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcatttcatggag |
273 |
Q |
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| T |
43742234 |
taaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcacttcatgcag |
43742332 |
T |
|
| Q |
274 |
aatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgcttaaacttg |
373 |
Q |
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|||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
43742333 |
aatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgcttaaacttg |
43742432 |
T |
|
| Q |
374 |
taatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaaggctcctt |
473 |
Q |
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||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
43742433 |
taatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaaggctcctt |
43742532 |
T |
|
| Q |
474 |
ccttcat |
480 |
Q |
| |
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||||||| |
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| T |
43742533 |
ccttcat |
43742539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 37949934 - 37949847
Alignment:
| Q |
77 |
atagagttgtaaaaccagaaagcattttgcttggtcaacctggaacaactgatctcataacattgatcttgtcaggccagttagctttg |
165 |
Q |
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||||||||||||||| | ||| |||||||||| |||||| |||||||| || ||| | |||||||||||||| || ||||| ||||| |
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| T |
37949934 |
atagagttgtaaaactataaa-cattttgcttcatcaacccagaacaactaatttcacatcattgatcttgtcaagctagttaactttg |
37949847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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