View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_17 (Length: 418)
Name: NF12715_low_17
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 1784789 - 1785191
Alignment:
| Q |
16 |
aacatgaaattaaataacaaatattctattaactctaaaaaacaccatgttggaattcaagtgtgagtgcctaatttcgcattaattataacttagctaa |
115 |
Q |
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| T |
1784789 |
aacatgaaattaaataacaaatattctattaactctaaaaaa-accatgttggaattcaagtgcgagtgcctagtttcgcattaattataacttagttaa |
1784887 |
T |
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| Q |
116 |
atgaaaaatatataagagacttgacgcatatatctattatcttaagattttgggtgtggagatgtgatgttcacgctcttagtggttcaatatattatgt |
215 |
Q |
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| T |
1784888 |
atgaaagttatataagagacttgacacatatatctatcatcttaagattttgggtgtggagatgtgatgttcacgctcttagtgattcaatatattatgt |
1784987 |
T |
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| Q |
216 |
tgttgctctatgtgctctctcaa-acttctcaacaagtggtatcagagcccttgctcagctggatggggagcgggagtgaatctagatatgatggatcct |
314 |
Q |
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| T |
1784988 |
tgttgctctctgtgctctctcaagacttctcaacaagtggtatcagagcccttgctcagttggatggggagcgggagtgaatctagatatgatggatcct |
1785087 |
T |
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| Q |
315 |
tgtatcaaaggtattattattggtaatggagtcaggtgatatgttttgtttccgttggtttgtaacggcggtggaaatagttagaatttaagtgtgagtg |
414 |
Q |
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| T |
1785088 |
tgtatcaaaggtattattattggtaatggagtcaggtgacatgttttgtttccgttggtttgtaacggcggtgcaaatagttggaatttaagtgtgagta |
1785187 |
T |
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| Q |
415 |
attc |
418 |
Q |
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| T |
1785188 |
attc |
1785191 |
T |
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