View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_18 (Length: 403)
Name: NF12715_low_18
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 70 - 358
Target Start/End: Complemental strand, 42061294 - 42061004
Alignment:
| Q |
70 |
gataaggttgatctgagctattatcggtctcaagtgagaggtataaatgatggattttgttcacatagtgcaacaatatacaaagaatattaaaattaaa |
169 |
Q |
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| T |
42061294 |
gataaggttgatctgagctattctcggtctcaagtgagaggtataaatgatggatttggttcacacagtgcaacaa-atacaaagaatattaaaattaaa |
42061196 |
T |
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| Q |
170 |
aatgtatttacttttcatccgatgagtttttctgtttgtatttgcagaaaatatgaaatacata---nnnnnnnnacaagaaaatatgaaatatatgata |
266 |
Q |
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| T |
42061195 |
aatgtatttacttttcatccgatgagttgttctgtttgtatttgcaaaaaatatgaaatacatatttttttttttacaagaaaatatgaaatatatgata |
42061096 |
T |
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| Q |
267 |
tgtagacaagccttgtcgtaaatttttattcatcgctctacatattgagttaatgttgatggtagttcgatcggtaacctattagatcagaa |
358 |
Q |
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| T |
42061095 |
tgtagacaagcctcgtcataaatttttattcatcgctctacatattgaattaatgttgatggtagttcgataggtaacctagtagatcagaa |
42061004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 364 - 395
Target Start/End: Complemental strand, 42060929 - 42060898
Alignment:
| Q |
364 |
tcctggattgtcttattctccttcactctctg |
395 |
Q |
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| T |
42060929 |
tcctggattgtcttattctccttcactctctg |
42060898 |
T |
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