View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12715_low_20 (Length: 391)

Name: NF12715_low_20
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12715_low_20
NF12715_low_20
[»] chr2 (4 HSPs)
chr2 (10-284)||(28678052-28678328)
chr2 (341-371)||(28677936-28677966)
chr2 (296-345)||(42511322-42511371)
chr2 (296-344)||(11223793-11223841)
[»] chr1 (3 HSPs)
chr1 (295-371)||(17705545-17705618)
chr1 (293-322)||(30359458-30359487)
chr1 (295-323)||(31694638-31694666)
[»] chr6 (3 HSPs)
chr6 (296-370)||(7938144-7938219)
chr6 (294-345)||(17327588-17327639)
chr6 (295-323)||(426477-426505)
[»] chr5 (1 HSPs)
chr5 (290-321)||(40000487-40000518)
[»] chr4 (4 HSPs)
chr4 (296-345)||(2361915-2361964)
chr4 (294-323)||(11596295-11596324)
chr4 (294-323)||(18513173-18513202)
chr4 (298-371)||(22440559-22440632)
[»] chr7 (1 HSPs)
chr7 (296-348)||(6490783-6490835)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 28678328 - 28678052
Alignment:
Q  10 ttcactgttactcttgaatttcatttcagtgatttttataattcatatatattttttgttctgtttagcttattggatcatatgatttcctcaacatata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28678328 ttcactgttactcttgaatttcatttcagtgatttttataattcatatatattttttgttctgtttagcttattggatcatatgatttcctcaacatata 28678229  T
Q  110 caatttttgtgttgttaaaggaggaaaaatgtttgtgaaatgaaaaattggaggttttagtttctgagttgttttgtgattttgcgtgtgacat---tga 206  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   |||    
T  28678228 caatttttgtgttgttaaaggtggaaaaatgtatgtgaaatgaaaaattgggggttttagtttatgagttgttttgtgattttgcgtgtgacattgatga 28678129  T
Q  207 cagtgataaacctctcaggttctcaatagcattaaatattgatttcaggtcaaaattaagtttccaacttcaatttct 284  Q
     ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28678128 tagtgataaaccactcaggttctcaatagca-taaatattgatttcaggtcaaaattaagtttccaacttcaatttct 28678052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 371
Target Start/End: Complemental strand, 28677966 - 28677936
Alignment:
Q  341 gacaccgaacatataattacactgaattatg 371  Q
    |||||||||||||||||||||||||||||||    
T  28677966 gacaccgaacatataattacactgaattatg 28677936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 42511322 - 42511371
Alignment:
Q  296 ctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacac 345  Q
    |||||||||||||||||||||| ||||| | ||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacac 42511371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 11223793 - 11223841
Alignment:
Q  296 ctatgaagcacggacactcctcagattaacggtgtctctgtgtcagaca 344  Q
    ||||||||||||||||||||||||||||   ||||| | ||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 17705545 - 17705618
Alignment:
Q  295 cctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacaccgaacatataattacactgaattatg 371  Q
    ||||||||||||||||||||||||||||||  |||||   | ||| |||||   |||||||||||||||||||||||    
T  17705545 cctatgaagcacggacactcctcagattaagcgtgtc---gcgtccgacacgacacatataattacactgaattatg 17705618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Complemental strand, 30359487 - 30359458
Alignment:
Q  293 tacctatgaagcacggacactcctcagatt 322  Q
    ||||||||||||||||||||||||||||||    
T  30359487 tacctatgaagcacggacactcctcagatt 30359458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 31694638 - 31694666
Alignment:
Q  295 cctatgaagcacggacactcctcagatta 323  Q
    |||||||||||||||||||||||||||||    
T  31694638 cctatgaagcacggacactcctcagatta 31694666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 7938219 - 7938144
Alignment:
Q  296 ctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacaccga-acatataattacactgaattat 370  Q
    |||||||||||||||||||||| ||| |   ||||||| ||||| |||||||| || |||||||||||| ||||||    
T  7938219 ctatgaagcacggacactcctcggatcaggcgtgtctcggtgtcggacaccgacacttataattacactaaattat 7938144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 17327588 - 17327639
Alignment:
Q  294 acctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacac 345  Q
    |||||||||||||||||||||||| |||||   ||||| |||||||||||||    
T  17327588 acctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacac 17327639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 323
Target Start/End: Original strand, 426477 - 426505
Alignment:
Q  295 cctatgaagcacggacactcctcagatta 323  Q
    |||||||||||||||||||||||||||||    
T  426477 cctatgaagcacggacactcctcagatta 426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 321
Target Start/End: Original strand, 40000487 - 40000518
Alignment:
Q  290 acatacctatgaagcacggacactcctcagat 321  Q
    ||||||||||||||||||||||||||||||||    
T  40000487 acatacctatgaagcacggacactcctcagat 40000518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 2361915 - 2361964
Alignment:
Q  296 ctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacac 345  Q
    ||||||||||||||||||| ||||||||   ||||||| |||||||||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacac 2361964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 11596295 - 11596324
Alignment:
Q  294 acctatgaagcacggacactcctcagatta 323  Q
    ||||||||||||||||||||||||||||||    
T  11596295 acctatgaagcacggacactcctcagatta 11596324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 18513173 - 18513202
Alignment:
Q  294 acctatgaagcacggacactcctcagatta 323  Q
    ||||||||||||||||||||||||||||||    
T  18513173 acctatgaagcacggacactcctcagatta 18513202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 22440559 - 22440632
Alignment:
Q  298 atgaagcacggacactcctcagattaacggtgtctctgtgtcagacaccgaacatataattacactgaattatg 371  Q
    |||||||||||||||||||| |||||   |||||   ||||| |||||   |||||||||||||||||||||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacacgtcacatataattacactgaattatg 22440632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 6490835 - 6490783
Alignment:
Q  296 ctatgaagcacggacactcctcagattaacggtgtctctgtgtcagacaccga 348  Q
    |||||||||||||||||||||| ||||||  ||||| | ||||| ||||||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacaccga 6490783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University