View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12715_low_22 (Length: 360)
Name: NF12715_low_22
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_22 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 34944612 - 34944982
Alignment:
| Q |
1 |
tccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34944612 |
tccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcataga |
34944711 |
T |
|
| Q |
101 |
catggaattggcttcccactttcaaca--------tttatatataagccctttttatatttatataattatgtagcaaattattggtgtgtttggtcgta |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
34944712 |
catggaattggcttcccactttcaacaaattaacatttatatataaggcctttttatatttatataattatgtagcaaattattggtatgtttggttgta |
34944811 |
T |
|
| Q |
193 |
cgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaaatatagaagccacaaactggggcatcagactgaacgtcg---tgagtgaactct |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
34944812 |
cgttgaagcgtgaattctcacgtttcgatgccattctaccgtgaaaatatagaagccacaaattggggcatcagactgaacgtcgtattgagtgaactct |
34944911 |
T |
|
| Q |
290 |
catcgctaaagcaaatgtatactatattatatctgagatatataatcatgaattcaacggaattccaataa |
360 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34944912 |
caccgctaaagcaaatgtatactatattatatttgaaatatataatcatgaattcaacggaattccaataa |
34944982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34948841 - 34948966
Alignment:
| Q |
1 |
tccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatt--tcctactcata |
98 |
Q |
| |
|
|||| ||||||| ||||||||| | || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||| |
|
|
| T |
34948841 |
tccaccaccttcccatgagatgcatgaattccttactgcattgcctgttggaattggtgttctgtgtagcatgctgtttgttgcattccccccactcata |
34948940 |
T |
|
| Q |
99 |
gacatggaattggcttcccactttca |
124 |
Q |
| |
|
||| ||||||||| |||||||||||| |
|
|
| T |
34948941 |
gacgtggaattggtttcccactttca |
34948966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 10101075 - 10101174
Alignment:
| Q |
176 |
tggtgtgtttggtcgtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaaatatagaagccacaaactggggcatcagactgaacgt |
275 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||| || |||||| |||| ||||| |
|
|
| T |
10101075 |
tggtatgtttgcgcgtacgttgaagcgtgaattttcgtgtttcaatgccattctaccgtgaaaatatagaagccacaaattgtggcatcggactaaacgt |
10101174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 1046930 - 1046856
Alignment:
| Q |
181 |
tgtttggtcgtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaa-atatagaagccacaaa |
254 |
Q |
| |
|
|||||||| |||| |||||| ||||||||| |||||||||| |||||||| | ||| |||||||||||||||| |
|
|
| T |
1046930 |
tgtttggttgtacattgaagtttgaattctcgcgtttcgatgtcattctaccattaaatatatagaagccacaaa |
1046856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 4178759 - 4178659
Alignment:
| Q |
27 |
aaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcccactttcaac |
126 |
Q |
| |
|
||||||| || || |||||||| | |||||| ||||| || |||||||| || ||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
4178759 |
aaatcctcacggcgttgcctgtggcaattggcgttttttgcagcatgcttttcgttgcatttcctactgagagacatggaattgggttccccctttcaac |
4178660 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
4178659 |
a |
4178659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 4167832 - 4167732
Alignment:
| Q |
27 |
aaatccttactgcattgcctgttggaattggtgttttctgtagcatgctgtttgttgcatttcctactcatagacatggaattggcttcccactttcaac |
126 |
Q |
| |
|
||||||| || || |||||||| | |||||| | ||| || |||||||| || ||| |||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
4167832 |
aaatcctcacggcgttgcctgtggcaattggcgatttttgcagcatgcttttcgttacatttcctacagagagacatggaattggcttccccctttcaac |
4167733 |
T |
|
| Q |
127 |
a |
127 |
Q |
| |
|
| |
|
|
| T |
4167732 |
a |
4167732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 27554073 - 27554132
Alignment:
| Q |
190 |
gtacgttgaagcgtgaattctcacgtttcgatgccattctactgtgaaaatatagaagcc |
249 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||| | |||||| |||||||||||||||| |
|
|
| T |
27554073 |
gtacgttgaagtgtgatttctcgcgtttcgatgtcgttctaccatgaaaatatagaagcc |
27554132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University