View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12715_low_28 (Length: 323)

Name: NF12715_low_28
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12715_low_28
NF12715_low_28
[»] chr3 (15 HSPs)
chr3 (19-315)||(6736649-6736945)
chr3 (19-286)||(6947928-6948195)
chr3 (19-315)||(6479056-6479352)
chr3 (19-315)||(6553512-6553808)
chr3 (19-315)||(8590388-8590684)
chr3 (19-315)||(8455313-8455609)
chr3 (19-315)||(6519236-6519532)
chr3 (175-303)||(5281466-5281594)
chr3 (220-311)||(5299588-5299679)
chr3 (175-311)||(5250981-5251117)
chr3 (220-282)||(8479979-8480041)
chr3 (255-311)||(4388024-4388080)
chr3 (255-311)||(5268948-5269004)
chr3 (19-68)||(8480100-8480149)
chr3 (254-306)||(8568067-8568119)
[»] scaffold0425 (1 HSPs)
scaffold0425 (19-315)||(6551-6847)
[»] chr4 (2 HSPs)
chr4 (234-315)||(41068403-41068482)
chr4 (19-81)||(41068553-41068615)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 6736649 - 6736945
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6736649 actaagccttcattactagcactaggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 6736748  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6736749 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcaccttatttagcattgcatcagtaga 6736848  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  6736849 aatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6736945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 6947928 - 6948195
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6947928 actaagccttcattactagcgcaaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctac 6948027  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948028 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 6948127  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacat 286  Q
     ||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  6948128 aatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcacat 6948195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 6479352 - 6479056
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    |||||||||||||||||||||   ||||||||| ||||||||||| | | ||||||| ||||||||| |||||||||||| || |||||||||||||||     
T  6479352 actaagccttcattactagcactgggaccttctgccaatcccaacacctacttttgcattgcaagaaattctagtttatccagttgttcattgagcctag 6479253  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6479252 attcaaatggatttgtagttaaagctgaaaccacgcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 6479153  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
    |||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6479152 tatctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgct 6479056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 6553808 - 6553512
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  6553808 actaagccttcattactagcactaggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctac 6553709  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    ||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  6553708 attcaaatggatttgtagttaaagctgaaacgaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtaga 6553609  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  6553608 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6553512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 8590388 - 8590684
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||      
T  8590388 actaagccttcgttactagcacagggaccttctcccaatcccaactttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctgg 8590487  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8590488 tttcaaatggatttgtagttaaagctgaaaccaagcccaataaattgctgctaagtggttcagatttagctttcagcttatttagcattgcatcagtaga 8590587  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  8590588 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgct 8590684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 8455313 - 8455609
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    |||||||||||||| |||||| |||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||| || |||||||||||||||     
T  8455313 actaagccttcattcctagcacaaggaccttctcccaatctcaactctttccttttctttgcaagaaattctagtttatccagttgttcattgagcctag 8455412  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  8455413 attcaaatggatttctagataaagctgaaaccaagcccaataaattggtggtaagtggttcagattctgctttcaggttatttagcattgcatcagtaga 8455512  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  8455513 aatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 8455609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 6519532 - 6519236
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    ||||||||||||||||||||| |||||||  || ||||||||| |  |||| |||| | |||||||  ||||||| | || ||  ||| ||||||||||     
T  6519532 actaagccttcattactagcacaaggaccaacttccaatcccagccttttcgtttgttgtgcaagagattctagtgtctccagtagtttattgagcctag 6519433  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  6519432 attcaaatggatttccagttaaagctgaaacccagccaaataaattggtggtaagtggttcagattcagctttcaacttatatatcattgcatcagtaga 6519333  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||| | |||||||    
T  6519332 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgct 6519236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 5281466 - 5281594
Alignment:
Q  175 ggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagcc 274  Q
    |||||||||||| ||||||||||||| ||   ||| |||||||  |||||||| || | ||||||||| ||||| | | |||||||||| ||||||||||    
T  5281466 ggttcagattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagcc 5281565  T
Q  275 acttcttcacatatatgctttggtactgc 303  Q
    ||||||| |||||| |||||| |||||||    
T  5281566 acttctttacatatgtgcttttgtactgc 5281594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 311
Target Start/End: Original strand, 5299588 - 5299679
Alignment:
Q  220 atctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctc 311  Q
    |||||||| || ||||| ||||||||||||| |||||||||||| ||| |||||||||||||||| |||  ||||||||| |||||| ||||    
T  5299588 atctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctc 5299679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 5250981 - 5251117
Alignment:
Q  175 ggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagcc 274  Q
    |||| |||||||||||||||||| || ||   ||||||||| |  ||||||||||| || |||||  | |||||   |  ||||||||| ||||||||||    
T  5250981 ggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagcc 5251080  T
Q  275 acttcttcacatatatgctttggtactgctttatctc 311  Q
    |||||||||| || ||||||||||| ||||| |||||    
T  5251081 acttcttcacgtacatgctttggtattgcttcatctc 5251117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 8480041 - 8479979
Alignment:
Q  220 atctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttc 282  Q
    ||||||| ||||||||||| ||||||||| | ||||||||||||||||||||| || ||||||    
T  8480041 atctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc 8479979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 4388080 - 4388024
Alignment:
Q  255 atgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctc 311  Q
    ||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  4388080 atgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctc 4388024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 5268948 - 5269004
Alignment:
Q  255 atgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctc 311  Q
    ||||||||| |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  5268948 atgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctc 5269004  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8480149 - 8480100
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactcttt 68  Q
    ||||||||||||||  ||||   |||||||||||||||||||||||||||    
T  8480149 actaagccttcattgttagcgttaggaccttctcccaatcccaactcttt 8480100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 8568119 - 8568067
Alignment:
Q  254 catgtttaagttcatcaagccacttcttcacatatatgctttggtactgcttt 306  Q
    ||||||| |||| || |||||| |||||||||||| || ||||||||||||||    
T  8568119 catgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt 8568067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 6847 - 6551
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctac 118  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  6847 actaagccttcattactagcactaggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctac 6748  T
Q  119 attcaaatggatttgtagttaaagctgaaaccaagcccaataaattagtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtaga 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||||||||||||    
T  6747 attcaaatggatttgtagttaaagctgaaaccaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtaga 6648  T
Q  219 tatctcatctaatagttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
     ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  6647 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6551  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 41068482 - 41068403
Alignment:
Q  234 ttggtctgcttcatacagaacatgtttaagttcatcaagccacttcttcacatatatgctttggtactgctttatctctgct 315  Q
    ||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||| | || |||||||    
T  41068482 ttggtctgcttcaaaca--acatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgct 41068403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41068615 - 41068553
Alignment:
Q  19 actaagccttcattactagcaaaaggaccttctcccaatcccaactctttcttttgctttgca 81  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  41068615 actaagccttcattactagcgttaggaccttctcccaatcccaactctttcttttgctttgca 41068553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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