View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_34 (Length: 262)
Name: NF12715_low_34
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 50916545 - 50916790
Alignment:
| Q |
1 |
ttctttacaaactcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagtttaaagcgttctgct |
100 |
Q |
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| T |
50916545 |
ttctttacaa-ctcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctggagtttaaagcgttctgct |
50916643 |
T |
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| Q |
101 |
gttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaataggagttatgtaattgtttgt |
200 |
Q |
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| T |
50916644 |
gttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaataggagttatgtaattgtttgt |
50916743 |
T |
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| Q |
201 |
tgtcatgctgagttgtgaatgattgtggtgtaaaacaatttttcatt |
247 |
Q |
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| T |
50916744 |
tgtcatgctgagttgtgaatgattgtggtgtaaaacaattttacatt |
50916790 |
T |
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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 42350899 - 42351041
Alignment:
| Q |
18 |
tttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagtttaaagcgttctgctgttattagagcttcaga |
117 |
Q |
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||||| |||||| |||||| ||||| || |||||| |||||||||||||||| |||||||| | |||| ||||||||| |||||||||||||| ||||| |
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| T |
42350899 |
tttatgaaacctactctagatttattcaataataaggactttattttaatga-tttacttgatgcagttcaaagcgttcggctgttattagagcatcaga |
42350997 |
T |
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| Q |
118 |
tggtttccggcaaagagaccctgcatctcacacaattcacattg |
161 |
Q |
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| T |
42350998 |
tgatttctggccaagagaccctgcatctcacacaattcacattg |
42351041 |
T |
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