View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_35 (Length: 252)
Name: NF12715_low_35
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 48925509 - 48925678
Alignment:
| Q |
1 |
atataaatttatgttacaactgtatgaatgaaacatgaaagtctctatacaatatttccgggaagactccttcatagtccaaagtcaatacaactctatt |
100 |
Q |
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| T |
48925509 |
atataaatttatgttacaactgtatgaatgaaacatgaaagtctctatacaatatttccgggaagactccttcatagtccaaagtcaatacaactctttt |
48925608 |
T |
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| Q |
101 |
tacctttgaccattctcttcttgcaatgtctacaacgctcaaacttttttacacacacacaaacgtcacc |
170 |
Q |
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| T |
48925609 |
tacctttgaccattctcttcttgcaatgtctacgacgctcaaacttttttacacacacacaaacgtcacc |
48925678 |
T |
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 32286773 - 32286712
Alignment:
| Q |
191 |
cttcttcttcttccattttggacctcatcctcgaagttacatcatttgggcacttgttcata |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
32286773 |
cttcttcttcttccattttggacctcatcctcgaagctacatcatttgggcacttgtccata |
32286712 |
T |
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