View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12715_low_44 (Length: 213)
Name: NF12715_low_44
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 54472068 - 54471879
Alignment:
| Q |
6 |
gaggaggagcagagacaccctggttcggaggcaatggtgagttgttaggtggagcctgtgatgactnnnnnnnnnnnnnnnnnnnnnnnnattgtgatgg |
105 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54472068 |
gaggaggagaaaagacaccctggtttggaggcaatggtgagttgttaggtggagcctgtgatgactgtggttgtggtggtggtggtggtgattgtgatgg |
54471969 |
T |
|
| Q |
106 |
ttgagatggggaagtgttagaaggtggagtcggagacggagaagatggaggaggggaagatggtgatggagacgatggaggaggtgattg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54471968 |
ttgagatggggaagtgttagaaggtggagtcggagacggagaagatggaggaggggaagatggtgatggagacgatggaggaggtgattg |
54471879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University