View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_5 (Length: 765)
Name: NF12715_low_5
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 1 - 749
Target Start/End: Complemental strand, 56232018 - 56231264
Alignment:
| Q |
1 |
tacacatgaagggatgagaagaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgtt |
100 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232018 |
tacaaatgaagggatgagaaaaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgtt |
56231919 |
T |
|
| Q |
101 |
gcaggcaggaaatgaggatcagcaataagctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaacttt |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
56231918 |
gcaggtaggaaatgaggatcagcaataagctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaactct |
56231819 |
T |
|
| Q |
201 |
tttccactcttgcactgattcctctaagacaaaccaatattcggccccttgctttctcggtgacaattgttccattcatacatagagtactacacaatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
56231818 |
tttccactcttgcactgattcctctaagacaaaccaatattcggccccttgctttctcggggtcaattgttccattcatacatagagtactacacaatgg |
56231719 |
T |
|
| Q |
301 |
aaaatttgagagataaggtgatgtcagtttgaatcctccattgacattactaacaactaattatatttacattcaccattccaaaaataagttaaacaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231718 |
aaaatttgagagataaggtgatgtcagtttgaatcctccattgacattactaacaactaattatatttacattcaccattccaaaaataagttaaacaac |
56231619 |
T |
|
| Q |
401 |
aaactagaccgtaaatacaaccagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgtt |
500 |
Q |
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| T |
56231618 |
aaactagaccgtaaatacaaccagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgtt |
56231519 |
T |
|
| Q |
501 |
ttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaactt---gacttggttaattaatgg |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
56231518 |
ttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaacttgacgacttggttaattaatgg |
56231419 |
T |
|
| Q |
598 |
tatgtc---acaagaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagca |
694 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231418 |
tatgtcaaaagaagaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgcagca |
56231319 |
T |
|
| Q |
695 |
acagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaat |
749 |
Q |
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| T |
56231318 |
acagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaat |
56231264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 303 - 749
Target Start/End: Complemental strand, 39189453 - 39188990
Alignment:
| Q |
303 |
aatttgagagataaggtgatgtcagtttgaatcctccattgacattactaacaactaattatatttacattcaccattccaaaaataagttaaacaacaa |
402 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39189453 |
aattttagagatgaggtgatgtcagtttgaatcctccattgacattactaacaaccaattatatttacattcaccattccaaaaataagttaaacaacaa |
39189354 |
T |
|
| Q |
403 |
actagaccgtaaatacaaccagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagcttgtttt |
502 |
Q |
| |
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|| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
39189353 |
acaagaccgcaaatacaagcagtatatacttacgcgttttcaaccggtgcttcagccaattttgcctcagcagcagtaatgagtggataaagcttgtttt |
39189254 |
T |
|
| Q |
503 |
ctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatg---------gaaaacttg----acttg-gtt |
588 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| || |
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| T |
39189253 |
ctggcaaagctgtagaaaggctagctccctgataatcaatcgataatggaaatattagagaagaaaatggaagtgatagaaaaaatgaaaaacttgactt |
39189154 |
T |
|
| Q |
589 |
aattaatggtatgtcacaa---gaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggta |
685 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||| |||| |
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| T |
39189153 |
tattaatggtatgtcacaagatgaagaaaaattggataataccttaaagtgttgtccattatggagttgaacaacagtatcaaactctctatctaaggta |
39189054 |
T |
|
| Q |
686 |
cttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaat |
749 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
39189053 |
cttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaaatgttggtccagaat |
39188990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 39189806 - 39189513
Alignment:
| Q |
6 |
atgaagggatgagaagaggagagagcaacaaaagttacttggttgaattgatgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcagg |
105 |
Q |
| |
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|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||| |||| || ||| |
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| T |
39189806 |
atgaagggatgacaaaaggag-gagcaacaaaagttacttggttgaattgatgtaggcaaagacagcaacaccatcttcataaataatatgtgctgtagg |
39189708 |
T |
|
| Q |
106 |
caggaaatgaggatcagcaataagctcattgccattagactgatcattacaaagaatcattccaactgcttcagcctccaaagcaacaaaacttttttcc |
205 |
Q |
| |
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||||||||||||||| || ||||||||||||||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
39189707 |
taggaaatgaggatcatcagtaagctcattgccatgagaccgatcgttaaaaagaatcattccaactgctttagcctccaaagcaacaagactcttttcc |
39189608 |
T |
|
| Q |
206 |
actcttgcactgattcctctaagacaaaccaatattcggccccttgctttctcggtgacaattgttccattcatacatagagtactacacaatgg |
300 |
Q |
| |
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||| | || | || |||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
39189607 |
actttcccattaatacctcgaagacaaaccaatattcggccacttgctttctcggggtcaattgttccattcatacatagagtactacacaatgg |
39189513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 671 - 744
Target Start/End: Original strand, 31050907 - 31050980
Alignment:
| Q |
671 |
tctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcc |
744 |
Q |
| |
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|||||||| || ||||| ||||||||||| || | |||||| |||||||| | |||| ||||||| |||||||| |
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| T |
31050907 |
tctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtcc |
31050980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 43014361 - 43014434
Alignment:
| Q |
56 |
atgtaggcaaagagagcaacgccatctgcataagtaatctgtgttgcaggcaggaaatgaggatcagcaataag |
129 |
Q |
| |
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||||||||||| | |||||| |||||| ||||| ||||||||| ||| | || ||||| ||||||||||||||| |
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| T |
43014361 |
atgtaggcaaacacagcaacaccatcttcataattaatctgtgatgctgacaagaaattaggatcagcaataag |
43014434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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