View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12715_low_6 (Length: 698)
Name: NF12715_low_6
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12715_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 129 - 682
Target Start/End: Complemental strand, 1267949 - 1267406
Alignment:
| Q |
129 |
catttccaatttgaaaagaggaaagtaatatttactcattgcttgaatattgcactcattttcggttggaagtttgttccctagataagcgaatgggaaa |
228 |
Q |
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| T |
1267949 |
catttccaatttgaaaag--gaaagtaatatttactcattgcttgaatattgctctcattttcggttggaagtttgttccctggataagcgaatgggaaa |
1267852 |
T |
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| Q |
229 |
tgtaaccgcgagtgttgcactaaagcattggcgtggtacaccccatcaatataacaatgccatatgagataaattatcttaaaaatggatagtgaattag |
328 |
Q |
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| T |
1267851 |
tgtaaccacgagtgttgcactaaagcattggcgtggtacacccgatcaatataacaatgccgtatgagataaattatcttaaaaatggatagtgaattag |
1267752 |
T |
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| Q |
329 |
ttgtgttggggataaaaggaaagaagacctacattgatgcgcaactcatttagggaactttgatttcacaaagtctcccccttacccgtgctcgtgcccc |
428 |
Q |
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| T |
1267751 |
ttgtgttggggataaaaggaaagaagacctacattgatgcgcaactcatttagggaactttgatttcacaaagtctcacccttatccgtgtccgtg---- |
1267656 |
T |
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| Q |
429 |
gtaccgtacccatctaaatttgtgggtaattattcgaacttaagtctggactcatcatagcgtggtttaacctatccattgtagatattttttgcggata |
528 |
Q |
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| T |
1267655 |
--tccgtacccatctaaatttgtgggtaattactcgaacttaagtctggactcatcatagcgtggtttaacttacccattgtagatattttttgcaggta |
1267558 |
T |
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| Q |
529 |
accatcacattttggtctaattaccatccctacctcctaataatatggaataactccaacaaactcccagataaaacccactctcatcctaactatctag |
628 |
Q |
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| T |
1267557 |
accattagattttgatctaattgccatccctacctcctaacaatatggaataactccaacaaactccc--gtaaaacccactctcatcctaactatctag |
1267460 |
T |
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| Q |
629 |
acacaagtaccacacccttgacgcaaccccacaaatgacaaacaaattatatat |
682 |
Q |
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| T |
1267459 |
acacaagtaccacacccttgacgcaaccccacaaatgacaaacaaattatatat |
1267406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 1226658 - 1226734
Alignment:
| Q |
303 |
tatcttaaaaatggatagtgaattagttgtgttgggga-taaaaggaaagaagacctacattgatgcgcaactcatt |
378 |
Q |
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| T |
1226658 |
tatcttagaaatggatggtgaagtgattgtatttgggactgaaaggaaacaagacctacattgatgtgcaactcatt |
1226734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 1247687 - 1247747
Alignment:
| Q |
334 |
ttggggataaaaggaaagaagacctacattgatgcgcaactcatttagggaactttgattt |
394 |
Q |
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| T |
1247687 |
ttggggttgaaaggaaacaagacctacattgatgcacaacttattacgggaacattgattt |
1247747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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