View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12715_low_7 (Length: 686)

Name: NF12715_low_7
Description: NF12715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12715_low_7
NF12715_low_7
[»] chr3 (3 HSPs)
chr3 (17-677)||(25522367-25523023)
chr3 (475-653)||(49773565-49773743)
chr3 (476-635)||(12717006-12717165)
[»] chr5 (2 HSPs)
chr5 (470-677)||(29777387-29777594)
chr5 (339-391)||(29777683-29777735)
[»] chr7 (14 HSPs)
chr7 (475-632)||(39537613-39537770)
chr7 (475-632)||(39547078-39547235)
chr7 (475-632)||(1084415-1084572)
chr7 (470-535)||(21902029-21902094)
chr7 (475-632)||(39339086-39339243)
chr7 (476-644)||(42153550-42153718)
chr7 (475-662)||(39563709-39563896)
chr7 (476-635)||(42132579-42132738)
chr7 (476-635)||(42171388-42171547)
chr7 (475-632)||(39353929-39354086)
chr7 (475-539)||(39366602-39366666)
chr7 (476-644)||(42141748-42141916)
chr7 (350-391)||(21902183-21902224)
chr7 (475-540)||(39621658-39621723)
[»] chr2 (3 HSPs)
chr2 (475-668)||(44233575-44233768)
chr2 (475-668)||(44222753-44222946)
chr2 (475-626)||(44210553-44210704)
[»] chr8 (1 HSPs)
chr8 (475-671)||(4501667-4501863)
[»] chr4 (5 HSPs)
chr4 (475-626)||(2887433-2887584)
chr4 (475-626)||(2896770-2896921)
chr4 (475-662)||(46452195-46452382)
chr4 (475-626)||(2877910-2878061)
chr4 (475-527)||(51049755-51049807)
[»] chr1 (2 HSPs)
chr1 (475-653)||(2148395-2148573)
chr1 (475-632)||(41687151-41687308)


Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 677
Target Start/End: Original strand, 25522367 - 25523023
Alignment:
Q  17 agttacctgaattggtcggaattttcataaacatttgcaaagtctacaccaagtttttcttcaatagcaagtgtggtaacctcgagcatccaagtagctg 116  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  25522367 agttacctgaattggtcagaattttcgtaaacatttgcaaagtctacaccgagtttttcttcaatagcaagtgtggtaacctcaagcatccaagttgctg 25522466  T
Q  117 gattgtagtcactaggaattggggagattccactgatactctgcatnnnnnnnnntgttgatgtttttaacaaagaaaattagcttaaattccacgaaca 216  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||| ||||    
T  25522467 gattatagtcactgggaattggggagattccactgatactctgcataaaaaaaa----tgatgtttttaacaaagaaaattagcttaaattccacaaaca 25522562  T
Q  217 tcgtttctaccttaacattacgatccttacacaactagaaaatgagaatgaattaagttatgcaagaaataattgnnnnnnnntgtcacctgaaaatatt 316  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||    
T  25522563 tcgtttctaccttaacattatgatccttacacaactagaaaatgagaatgaattaagttatacaagaaataattgaaagaaaatgtcacctgaaaatatt 25522662  T
Q  317 ttatcatcacatctgattggttaccaatcttccccccatagataacttgtcctccacgtttcataagaagtaactacnnnnnnngaattaaagctactta 416  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  25522663 ttatcatcacatttgattggttaccaatcttccccccatagataacttgtcctccacgtttcataagaagtaactacaaacaaagaattaaagctactta 25522762  T
Q  417 attatagttaataaaaatattaaattggttagaaagtagcaccttgcttaaacaactaacctcatcaaatgcttcaaatatatcaatacttggctgatgt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522763 attatagttaataaaaatattaaattggttagaaagtagcaccttgcttaaacaactaacctcatcaaatgcttcaaatatatcaatacttggctgatgt 25522862  T
Q  517 atggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaatggcagcggcacgtgcatcaagtccggaggtaggttcatcca 616  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522863 atggtacaaaccacagttcttccagtatcaacagtattgcgaacagttctcataacaatggcagcggcacgtgcatcaagtccggaggtaggttcatcca 25522962  T
Q  617 tgaagattatagaagggtttgctacaagttccactgctattgtcaatctctttctctgctc 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522963 tgaagattatagaagggtttgctacaagttccactgctattgtcaatctctttctctgctc 25523023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 475 - 653
Target Start/End: Complemental strand, 49773743 - 49773565
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| || ||||||||||||||||| |||||||| || || || || |||||||| || || || || ||||| |  || |||||||| || |    
T  49773743 acctcatcaaaagcatcaaatatatcaatactaggctgatgaattgtgcagacaacagttctccctgtgtccactgtattcctcactgttctcattacta 49773644  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgc 653  Q
    | ||||| || | ||||||||| || |||||||||||||||||||| || ||||| || || || |||||||| |||||    
T  49773643 tagcagcagctcttgcatcaaggccagaggtaggttcatccatgaatataatagatggattggcaacaagttcaactgc 49773565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 635
Target Start/End: Original strand, 12717006 - 12717165
Alignment:
Q  476 cctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaat 575  Q
    |||||||||| |||| ||| |||||||| ||||| || || || || || || |||||||| || || || || || || |  ||||||| ||| |||||    
T  12717006 cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcacatcacaat 12717105  T
Q  576 ggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtt 635  Q
     |||||||| |  |||||||| || || || ||||||||||||||||| || ||||||||    
T  12717106 agcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggtt 12717165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 470 - 677
Target Start/End: Complemental strand, 29777594 - 29777387
Alignment:
Q  470 aactaacctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcat 569  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||| |||    
T  29777594 aactaacttcatcaaatgcttcaaaaatatcaatacttggttgatgtatggtacagacaacagttcttccagtatcaacagtgttgcgaacagttcgcat 29777495  T
Q  570 aacaatggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaatctcttt 669  Q
    ||| || || |||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||||||||| |||||||| ||||| ||||||||     
T  29777494 aacgatagctgcggcacgagcatcaagtccagatgtaggctcgtccataaaaataatggaagggtttgctacaagctccactgcaattgttaatctcttc 29777395  T
Q  670 ctctgctc 677  Q
    ||||||||    
T  29777394 ctctgctc 29777387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 29777735 - 29777683
Alignment:
Q  339 accaatcttccccccatagataacttgtcctccacgtttcataagaagtaact 391  Q
    ||||||||| |||||||| |||||| |||| ||||||||||||||||||||||    
T  29777735 accaatctttcccccataaataactcgtcccccacgtttcataagaagtaact 29777683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 39537613 - 39537770
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| || || || || ||||||||||| || ||||||||||| || || || || | ||| |||||||||||||    
T  39537613 acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39537712  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
    | || || || | |||||||||||| || || || ||||||||||| |||||||||||    
T  39537713 tagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaagg 39537770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 39547078 - 39547235
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| || ||||| || ||||||||||| || |||||||| || || || || || | ||| |||||||||||||    
T  39547078 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcataacaa 39547177  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
    | || || || | |||||||||||| || || || ||||||||||| |||||||||||    
T  39547178 tagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaagg 39547235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 1084415 - 1084572
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || || ||  | | ||| |||||||||||||    
T  1084415 acctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttccagtgtctactgtgctcctaactgttctcataacaa 1084514  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
    | || || ||   |||||| || || || || || |||||||| || |||||||||||    
T  1084515 tcgctgctgccattgcatctagcccagaagttggctcatccataaatattatagaagg 1084572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 21902094 - 21902029
Alignment:
Q  470 aactaacctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttc 535  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||    
T  21902094 aactaacttcatcaaatgcttcaaaaatatcaatacttggttgatatatggtaaaaaccacagttc 21902029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 475 - 632
Target Start/End: Complemental strand, 39339243 - 39339086
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| || ||||| || || |||||||| || ||||||||||| || || || || | ||| |||||||||||||    
T  39339243 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa 39339144  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
    | || || || | |||||| || || || || || ||||||||||| ||||| |||||    
T  39339143 tagctgcagcccttgcatctagcccagaagttggctcatccatgaatattattgaagg 39339086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 476 - 644
Target Start/End: Original strand, 42153550 - 42153718
Alignment:
Q  476 cctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaat 575  Q
    |||||||||| |||||||| || || |||||||| ||||| || || ||||| |||||||| || ||||| || ||||| |  || |||| |||||| ||    
T  42153550 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctgtatctactgtatttctcacggttcgcataacgat 42153649  T
Q  576 ggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaag 644  Q
     |||||||| |  ||||| || || || || ||||||||||||||||| || |||||||| || |||||    
T  42153650 tgcagcggctctagcatcgaggcctgatgttggttcatccatgaagatgattgaagggttggcaacaag 42153718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 662
Target Start/End: Original strand, 39563709 - 39563896
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| || ||||| || || |||||||| || ||||||||||| |  || || || | ||| |||||||| ||||    
T  39563709 acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa 39563808  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaa 662  Q
    | || || || | |||||| || || || || |||||||||||||| ||||| ||||| || ||||| |  || ||||| ||||||||    
T  39563809 tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaa 39563896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 635
Target Start/End: Original strand, 42132579 - 42132738
Alignment:
Q  476 cctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaat 575  Q
    |||||||||| |||||||| |||||||| ||||| || || || || || || |||||||| || || || || || || |  ||||||| ||| |||||    
T  42132579 cctcatcaaaagcttcaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcgcatcacaat 42132678  T
Q  576 ggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtt 635  Q
    ||||||||| |  |||||||| || || || ||||||||||||||||| || ||||||||    
T  42132679 ggcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggtt 42132738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 635
Target Start/End: Original strand, 42171388 - 42171547
Alignment:
Q  476 cctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaat 575  Q
    |||||||||| |||||||| |||||  | ||||| ||||| || || ||||| |||||||| || ||||| || ||||| |  || || | |||||||||    
T  42171388 cctcatcaaaagcttcaaaaatatccgtgcttggttgatgaattgtgcaaacaacagttctccctgtatctactgtatttctcacggtccgcataacaat 42171487  T
Q  576 ggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtt 635  Q
     |||||||| |  |||||||| || || || ||||||||||||||||| || ||||||||    
T  42171488 agcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagggtt 42171547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 632
Target Start/End: Complemental strand, 39354086 - 39353929
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| || ||||| || || |||||||| || |||||||| ||||| || || || | ||| |||||||| ||||    
T  39354086 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctgtatctactgtgtttctaactgttctcatcacaa 39353987  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
      || || || | |||||| || || || || |||||||||||||| ||||| |||||    
T  39353986 ctgctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaagg 39353929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 539
Target Start/End: Complemental strand, 39366666 - 39366602
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttcc 539  Q
    ||||||||||| | ||||||||||||||| || ||||| || ||||||||||| |||||||||||    
T  39366666 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttcc 39366602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 644
Target Start/End: Original strand, 42141748 - 42141916
Alignment:
Q  476 cctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaat 575  Q
    |||||||||| |||||||| || || |||||||| ||||| || || ||||| |||||||| || ||||| || ||||| |  || || | |||||| ||    
T  42141748 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctgtatccactgtatttctcacggtccgcataacgat 42141847  T
Q  576 ggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaag 644  Q
     |||||||| |  ||||| || || || || ||||||||||||||||| || |||||||| || |||||    
T  42141848 tgcagcggctctagcatcgaggcctgatgttggttcatccatgaagatgattgaagggttggcaacaag 42141916  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 21902224 - 21902183
Alignment:
Q  350 ccccatagataacttgtcctccacgtttcataagaagtaact 391  Q
    ||||||| ||||||||||| ||||||||||||||||||||||    
T  21902224 ccccataaataacttgtcccccacgtttcataagaagtaact 21902183  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 540
Target Start/End: Original strand, 39621658 - 39621723
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttcca 540  Q
    ||||||||||| | |||||||||||||||| |||  ||||| |||| ||| || ||||||||||||    
T  39621658 acctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttcca 39621723  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 475 - 668
Target Start/End: Original strand, 44233575 - 44233768
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||||||||||||||| ||||| || |||||||| |||||||| || || |||||||| || || || || || |  ||||||||||||||||    
T  44233575 acctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 44233674  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaatctctt 668  Q
    | ||||| || |  ||||| |  || || ||||| |||||||| || |||||||| || || || |||||||| ||||| || |||| ||||||    
T  44233675 ttgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagccacaagttcaactgcaatagtcagtctctt 44233768  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 475 - 668
Target Start/End: Original strand, 44222753 - 44222946
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||||||||||||||| ||||| || || ||||| |||||||| || || |||||||| || || || || || |  ||||||| ||||||||    
T  44222753 acctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcccgtgtccactgtgttccttacagttcgcataacaa 44222852  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaatctctt 668  Q
    | ||||| || |  ||||| |  || || ||||| ||||||||||| |||||||| || || || |||||||| ||||| || |||| ||||||    
T  44222853 ttgcagccgctctagcatctaaaccagaagtaggctcatccatgaaaattatagatggattagccacaagttcgactgcaatagtcagtctctt 44222946  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 626
Target Start/End: Original strand, 44210553 - 44210704
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||||||||||||||| ||||| || || ||||| |||||||| || || |||||||| || || || || || |  ||||||||||||||||    
T  44210553 acctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataacaa 44210652  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattat 626  Q
    | ||||| || |  ||||| |  || || || |||||||||||||| |||||    
T  44210653 ttgcagcagctctagcatctaaaccagaagttggttcatccatgaaaattat 44210704  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 475 - 671
Target Start/End: Complemental strand, 4501863 - 4501667
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| |||||||| |||||||| || || ||||| || || || || || |||||||||||||| ||||| || |  ||||| ||||||||||    
T  4501863 acctcatcaaaggcttcaaagatatcaatgctaggttgatgaattgtgcacacaactgttcttccagtatcaacagtgtttcttacagtcctcataacaa 4501764  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaatctctttct 671  Q
    | ||||| || | |||||| || || || || || ||||||||||| || || ||||| || || ||||| || || || |||||||  ||||||||    
T  4501763 tagcagctgctcttgcatctagaccagaagttggctcatccatgaatatgattgaaggattagcaacaagctcgaccgcaattgtcagcctctttct 4501667  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 626
Target Start/End: Complemental strand, 2887584 - 2887433
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || |||||||| || || || || || | ||| |||| ||||||||    
T  2887584 acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa 2887485  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattat 626  Q
    | ||||| || |  ||||| | ||| || ||||| ||||||||||| |||||    
T  2887484 ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattat 2887433  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 626
Target Start/End: Original strand, 2896770 - 2896921
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || |||||||| || || || || || | ||| |||| ||||||||    
T  2896770 acctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaactgttcgcataacaa 2896869  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattat 626  Q
    | ||||| || |  ||||| | ||| || ||||| ||||||||||| |||||    
T  2896870 ttgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattat 2896921  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 662
Target Start/End: Complemental strand, 46452382 - 46452195
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||| || || || |||||||| ||||| || || |  ||||  |||||||  ||| |||| |  ||||||||||| ||||    
T  46452382 acctcatcaaaggattcaaatatgtctatgctaggctgatggatggtgcagacaatcgttcgcccagtatttacaatattcctcacagttctcatcacaa 46452283  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgctattgtcaa 662  Q
    |||| || || |  ||||| | |||||| || || |||||||||||||  ||||||||||| || || |||||||||||||| |||||    
T  46452282 tggctgcagccctagcatccaatccggacgtgggctcatccatgaagaccatagaagggttggcaactagttccactgctatagtcaa 46452195  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 626
Target Start/End: Complemental strand, 2878061 - 2877910
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||| || |||||||| ||||| ||||||||||| || |||||||| || || || || || | ||| |||| ||||||||    
T  2878061 acctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataacaa 2877962  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattat 626  Q
    | ||||| || |  ||||| | ||| || ||||| || |||||||| |||||    
T  2877961 ttgcagcagctctagcatctaatccagatgtaggctcgtccatgaaaattat 2877910  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 51049807 - 51049755
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaac 527  Q
    ||||||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  51049807 acctcatcaaaagtctcaaatatatcgatacttggttgatgtatggtgcaaac 51049755  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 475 - 653
Target Start/End: Original strand, 2148395 - 2148573
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| |  |||||||| |||||||| |||||||| || || || ||||| || | ||| || || ||||| || |  || |||| ||| ||||    
T  2148395 acctcatcaaaggaatcaaatatgtcaatactcggctgatggatcgtgcacaccacggtacgtcctgtgtccacagtgttccttactgttcgcattacaa 2148494  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagggtttgctacaagttccactgc 653  Q
    | ||||| || || ||||| || || ||||| |||||||||||||| ||||| || || || ||||||||||| |||||    
T  2148495 tcgcagctgctcgagcatccaggccagaggttggttcatccatgaatattatcgatggattcgctacaagttcaactgc 2148573  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 632
Target Start/End: Original strand, 41687151 - 41687308
Alignment:
Q  475 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttccagtatcgacagtattgcgaacagttctcataacaa 574  Q
    ||||||||||| | ||||||||||||||| ||||| || || || || || ||||||||||| || |||||  | ||||| |  ||||| | ||||||||    
T  41687151 acctcatcaaaagattcaaatatatcaatgcttggttggtgaattgtgcagaccacagttctccctgtatccgctgtatttctgacagtacgcataacaa 41687250  T
Q  575 tggcagcggcacgtgcatcaagtccggaggtaggttcatccatgaagattatagaagg 632  Q
    | || || || |  |||||||| || || ||||| |||||||| ||||| || |||||    
T  41687251 ttgctgcagctctggcatcaaggcctgatgtaggctcatccataaagatgattgaagg 41687308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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