View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_high_8 (Length: 409)
Name: NF12716_high_8
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 40171005 - 40170605
Alignment:
| Q |
1 |
attaaagtacataaaattaggacatacatgcacgaattaggatttaagtcgtatatcccgatggtgtaaataaattttacacatacatctaattatattc |
100 |
Q |
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| T |
40171005 |
attaaagtacataaaatttgcacatacatgcacgaattaggatttaagttgtatatcccaatggtgtaaataaaatttacaaatgcatctaattatattc |
40170906 |
T |
|
| Q |
101 |
aatcattctactactgtatgatgtgcat--tccaaaaatatctcctcaaatatctgagcg--ataaaatgtaatcgaatgcatgtgtaaaacttttttac |
196 |
Q |
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| T |
40170905 |
aatcattctactactttattatgtgcatattcctaaaatatctcctcaaatatctgagcgcgataaaatgtgactgaatgcatgtgtaaaacttttatag |
40170806 |
T |
|
| Q |
197 |
accaataatgcatatcaattaaa-ctcattgtatactttcccacttaaaaccaaacacttgtccattgttttgtattgttcaactttatttgcagaagtt |
295 |
Q |
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| T |
40170805 |
gccgataatgcatatcaattaaaactcattatatactttcccacttaaaaccaaacacttgttcattgttttgtattgttcaactttatttgcaaaagtt |
40170706 |
T |
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| Q |
296 |
ccacatgcatagcatatatggtgggtcctaatgattttgataaaataatcctcaaaaaggtgaagacac-tatatgttaaatgaaaccatgcatgttgtt |
394 |
Q |
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| T |
40170705 |
ccacatgcatagaatatatggtgggtcctaatgattttgataaaataatcctc-aaaaggtgaacacacatatatgttaaattaaaccatgcatgttatt |
40170607 |
T |
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| Q |
395 |
at |
396 |
Q |
| |
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|| |
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| T |
40170606 |
at |
40170605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 36480073 - 36480121
Alignment:
| Q |
174 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
222 |
Q |
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| T |
36480073 |
atgcatgtgtaaaacttgtttacaccgacaatgcatatcaattaaactc |
36480121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 8279576 - 8279625
Alignment:
| Q |
174 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactca |
223 |
Q |
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| T |
8279576 |
atgcatgtgtaaaacttttttacaccaacagtgtatatgaattaaactca |
8279625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20996368 - 20996421
Alignment:
| Q |
174 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactcattgt |
227 |
Q |
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|||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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| T |
20996368 |
atgcttgtataaaacttttttacacttaatatgcatatcaattaaactcattgt |
20996421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 18637491 - 18637438
Alignment:
| Q |
169 |
atcgaatgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
222 |
Q |
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|||| |||||| |||||||||| ||||||| | |||||||||||||||||||| |
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| T |
18637491 |
atcgtatgcatatgtaaaacttctttacactgacaatgcatatcaattaaactc |
18637438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 28479165 - 28479117
Alignment:
| Q |
174 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
222 |
Q |
| |
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|||||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
28479165 |
atgcatgtgtaaaacttttttacaccgacggtgaatatcaattaaactc |
28479117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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