View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_1 (Length: 738)
Name: NF12716_low_1
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 563; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 16 - 724
Target Start/End: Original strand, 38389971 - 38390684
Alignment:
| Q |
16 |
cagctggctggttttagatttttcttactagc--------aagttcaacaggaaggctgcttatcccaacatcagtcagttgaaattgcatcgcaaactc |
107 |
Q |
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| T |
38389971 |
cagctgggtggttttagatttttcttactagctaggtagcaagtttaacaggaaggct---tatcccaacatcagtgagttgaaattgcatcgcaaactc |
38390067 |
T |
|
| Q |
108 |
tc-aggtgtcataaacatataaggtttctcatttaccgctcaatattgctccaatatcttttattaatgtgagttactaaaccacatattaataaccaac |
206 |
Q |
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| T |
38390068 |
tctaggtgtcaaaaacatataaggtttttcatttaccgctcaatattgctcctg-atcttttattaatgtgagttacaataccacatattaataaccaaa |
38390166 |
T |
|
| Q |
207 |
aatgaaactattaaaactcattatcttctaatcgtgtaaaaagaagatcataacgttgtacttactttcacagcttttctctcgaggcatacaaaaccca |
306 |
Q |
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| T |
38390167 |
aatgaaactattaaaactcattatcttctaatcatgtaaaaagaagatcataacgttatacttactttcacagcttttctctcgaggcatacaaaaccca |
38390266 |
T |
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| Q |
307 |
ttgaagcnnnnnnnnccaagcacatgctcacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcg |
406 |
Q |
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| T |
38390267 |
ttgaagcaaaaaaa-ccaagcacatgcttacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcg |
38390365 |
T |
|
| Q |
407 |
cattccacacagttatgactcttcaatctgcatatcttgttcttgttgatgccctacccccggaaatttccaacctgacattcttccagtttttcacttt |
506 |
Q |
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| T |
38390366 |
cattgcacacagttatgactcttcaatctgcatatcttgttcttgttgatgccctacccccggaaatttccaacctgacattcttccagtttttcacttt |
38390465 |
T |
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| Q |
507 |
tgttgttgttgctgttattgtatttgccgcaggaaacatgttg-ttttggaaattaaagaacatacaacctatgaaagaagcatacaaacttatggaatc |
605 |
Q |
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| T |
38390466 |
tgttgttgttgctgttattgtatttgccgcaggaaacatgttgtttttggaaattaaagaatatacaacctatgaaagaagcatacaaacttatggaatc |
38390565 |
T |
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| Q |
606 |
ctatctatgttgaagtatatcatgattgatatgaatatgataaatcaccacaaattgataatgtgaaaaacaggggagatgctggtaggactagcgaaag |
705 |
Q |
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| T |
38390566 |
ctatctatgttgaagtatatcatgattgatatgaatatgataaatcaccacaaattgataatgtgaaaaacaggggagatgctggtaggactagcgaaag |
38390665 |
T |
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| Q |
706 |
cttttttcatggatctgtg |
724 |
Q |
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| T |
38390666 |
cttttttcatggatctgtg |
38390684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 323 - 418
Target Start/End: Original strand, 38390784 - 38390878
Alignment:
| Q |
323 |
caagcacatgctcacacggacgccgggtacacaatatgtccctcgaagagtatgtgtcctttaaatcttgatgtgcttctatcgcattccacacag |
418 |
Q |
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| T |
38390784 |
caagcacatgctcacatgaac-cctagtacacaatatgtccctcagagagtatgtttcctttaaagcatgatgtgcttctattgcattgcacacag |
38390878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 237
Target Start/End: Complemental strand, 38391030 - 38390918
Alignment:
| Q |
124 |
tataaggtttctcatttaccgctcaatattgctccaatatcttttattaatgtgagttactaaaccacatattaataaccaacaatgaaactattaaaac |
223 |
Q |
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| T |
38391030 |
tataaggtttttcattttccgcccaatattgttcctg-atctttcattgatttgacctacaataccacataataataacaaaaaattaaactattaaaac |
38390932 |
T |
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| Q |
224 |
tcattatcttctaa |
237 |
Q |
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| T |
38390931 |
tcattatgttctaa |
38390918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 38389597 - 38389554
Alignment:
| Q |
194 |
attaataaccaacaatgaaactattaaaactcattatcttctaa |
237 |
Q |
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| T |
38389597 |
attaataaccaaaaattaaactattaaaactcattatattctaa |
38389554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 38389497 - 38389459
Alignment:
| Q |
275 |
cacagcttttctctcgaggcatacaaaacccattgaagc |
313 |
Q |
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| T |
38389497 |
cacaacttttctctcaaggcatacaaaacccattgaagc |
38389459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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