View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_10 (Length: 349)
Name: NF12716_low_10
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 8954666 - 8954999
Alignment:
| Q |
1 |
ccggattcataataaatccgaatgatccaatggaaaatccagagatcttcaacaaacatgttaatgttgatgaagtgaaaccttctcatacttactctca |
100 |
Q |
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| T |
8954666 |
ccggattcataataaatccgaacaatccaatggaaaatccagagatcttcaacaaacatgttaatgttgatgaagtgaaaccttctcatacttactctca |
8954765 |
T |
|
| Q |
101 |
caaagcaagttcaacggagaaaggaagccatgaagtaccgaaaaacaattctacacgccatttgcaccgccgcaggagtaggggaagtaaaggtagtttc |
200 |
Q |
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| T |
8954766 |
caaagcaagttcaacggagaaaggaagccatgaagtaccgaaaaacaattctacacaccatttgcaccgccgcaggagtaggggaagtaaaggtagtttc |
8954865 |
T |
|
| Q |
201 |
acatcagagtttggaagcgaaaaaagccacattgatcattctgtcatcaacaaaacttcacaatcagaacacaaaaggagtgtgtccaaaggaattggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8954866 |
acatcagagtttggaagcgaaaaaagccacattgatcattctgtcatcaacaaaacttcacaatcagaacacaaaaggagtgtgtccaaaggaattggca |
8954965 |
T |
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| Q |
301 |
gtaacactggtagcttatcttcatcaaatcacag |
334 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
8954966 |
gtaacactggtagcttctcttcatcaaatcacag |
8954999 |
T |
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