View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_12 (Length: 298)
Name: NF12716_low_12
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 49655305 - 49655022
Alignment:
| Q |
1 |
atgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagattaaggattggaaaaccaatagtattgttacaagtgataccaaaacc |
100 |
Q |
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| T |
49655305 |
atgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagattaaggattggaaaaccaatagtattgttacaagtgataccaaaacc |
49655206 |
T |
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| Q |
101 |
agggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttatactttggttgccacatgttttggcttcacaatctacaaatttttgt |
200 |
Q |
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| T |
49655205 |
agggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttatactttggttgccacatgttttggcttcacaatctacaaatttttgt |
49655106 |
T |
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| Q |
201 |
tctatagagcatacagtggttgtggtaagaagaagataaaaaagggtcatatatgaataaattaagggagaagagaagggaaag |
284 |
Q |
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| T |
49655105 |
tctatagagcatacagtggttgtggtaagaagaagataaaaaagggtgatgtatgaataaattaagggagaagagaagagaaag |
49655022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 49712827 - 49712626
Alignment:
| Q |
1 |
atgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagattaaggattggaaaaccaatagtattgttacaagtgataccaaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49712827 |
atgaatggttttgatagaaaatctcctcgattatgtattcagtattagaaagattaaggattggaaaaccaatagtattgttacaagtgataccaaaacc |
49712728 |
T |
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| Q |
101 |
agggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttatactttggttgccacatgttttggcttcacaatctacaaatttttgt |
200 |
Q |
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| T |
49712727 |
agggtagccacaataggaatgttgtaatcctattatatagaaagggtagcttatactttggttgccacatgttttggcttcacaatctacaaatttttgt |
49712628 |
T |
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| Q |
201 |
tc |
202 |
Q |
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| T |
49712627 |
tc |
49712626 |
T |
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