View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_17 (Length: 226)
Name: NF12716_low_17
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_17 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 249511 - 249697
Alignment:
| Q |
24 |
acaagttgagttctattattttcattgaatctccttagcaaattttcacttctataaatacctgaacaatcatggcagtaatcttcatcttcataccata |
123 |
Q |
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| T |
249511 |
acaagttgagttctattattttcattgaatctccttagcaagttttcacttctataaatacccgaacaatcatggcagtaatcttcatcttcataccata |
249610 |
T |
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| Q |
124 |
gctagagaacatacaagtaatcatctttgnnnnnnntatgacttccataagtaagaacctttttagtatttatatgatctttcatct |
210 |
Q |
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| T |
249611 |
gctagagaacatacaagtaatcatctttgaaaaaaatatgacttccataattaagaacctttttagtatttatatggtctttcatct |
249697 |
T |
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Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 14567864 - 14567678
Alignment:
| Q |
24 |
acaagttgagttctattattttcattgaatctccttagcaaattttcacttctataaatacctgaacaatcatggcagtaatcttcatcttcataccata |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14567864 |
acaagttgagttctattattttcattgaatctccttagcaagttttcacttctataaatacccgaacaatcatggcagtaatcttcatcttcataccata |
14567765 |
T |
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| Q |
124 |
gctagagaacatacaagtaatcatctttgnnnnnnntatgacttccataagtaagaacctttttagtatttatatgatctttcatct |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
14567764 |
gctagagaacatacaagtaatcatctttgaaaaaaatatgacttccataattaagaacctttttagtatttatatggtctttcatct |
14567678 |
T |
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