View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12716_low_3 (Length: 523)

Name: NF12716_low_3
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12716_low_3
NF12716_low_3
[»] chr8 (14 HSPs)
chr8 (20-213)||(42347916-42348109)
chr8 (250-391)||(43465112-43465256)
chr8 (217-392)||(31470738-31470914)
chr8 (223-273)||(32857081-32857131)
chr8 (347-391)||(1605038-1605082)
chr8 (211-273)||(5667084-5667146)
chr8 (346-391)||(16687512-16687557)
chr8 (221-273)||(5667186-5667238)
chr8 (221-273)||(16687519-16687571)
chr8 (225-273)||(31470853-31470901)
chr8 (221-258)||(1605038-1605075)
chr8 (319-387)||(32857067-32857136)
chr8 (217-273)||(5033250-5033306)
chr8 (209-273)||(43844558-43844622)
[»] chr2 (20 HSPs)
chr2 (217-391)||(39819056-39819230)
chr2 (226-391)||(12918535-12918700)
chr2 (252-391)||(15562232-15562371)
chr2 (248-357)||(7755360-7755469)
chr2 (220-302)||(5913521-5913602)
chr2 (248-379)||(13421692-13421823)
chr2 (221-277)||(12918638-12918693)
chr2 (221-277)||(39819168-39819223)
chr2 (347-391)||(12918498-12918543)
chr2 (347-384)||(39819060-39819097)
chr2 (223-259)||(12918508-12918544)
chr2 (213-273)||(32545877-32545937)
chr2 (246-305)||(30610233-30610292)
chr2 (459-505)||(6884901-6884947)
chr2 (212-277)||(14892345-14892410)
chr2 (220-273)||(44000783-44000836)
chr2 (356-384)||(5095756-5095784)
chr2 (217-273)||(5095822-5095877)
chr2 (214-274)||(14470582-14470642)
chr2 (251-291)||(18182591-18182631)
[»] chr4 (28 HSPs)
chr4 (217-391)||(31846782-31846956)
chr4 (218-391)||(31012121-31012294)
chr4 (250-357)||(6607420-6607527)
chr4 (250-373)||(6608375-6608498)
chr4 (217-390)||(2254529-2254698)
chr4 (220-293)||(32008325-32008398)
chr4 (210-271)||(15031959-15032020)
chr4 (239-304)||(43063533-43063598)
chr4 (217-273)||(46321444-46321500)
chr4 (324-389)||(32008336-32008402)
chr4 (221-273)||(54613030-54613082)
chr4 (213-251)||(11392299-11392337)
chr4 (217-291)||(33380704-33380778)
chr4 (226-286)||(44023033-44023092)
chr4 (230-277)||(6608454-6608500)
chr4 (318-384)||(46321429-46321496)
chr4 (218-300)||(53261171-53261253)
chr4 (219-273)||(30709989-30710043)
chr4 (250-291)||(9712943-9712984)
chr4 (351-384)||(31846919-31846952)
chr4 (212-273)||(53937888-53937949)
chr4 (251-291)||(22435379-22435419)
chr4 (221-277)||(31012232-31012287)
chr4 (221-277)||(31846789-31846844)
chr4 (223-271)||(32139818-32139866)
chr4 (217-273)||(35682159-35682215)
chr4 (248-300)||(54223577-54223629)
chr4 (333-384)||(54613030-54613082)
[»] chr1 (39 HSPs)
chr1 (217-391)||(9379811-9379985)
chr1 (217-391)||(9884834-9885008)
chr1 (248-394)||(50754748-50754894)
chr1 (248-391)||(28739304-28739447)
chr1 (217-391)||(6539546-6539724)
chr1 (256-391)||(28045350-28045486)
chr1 (252-358)||(15928097-15928204)
chr1 (217-391)||(10449447-10449612)
chr1 (217-305)||(44938871-44938959)
chr1 (455-516)||(32158792-32158853)
chr1 (217-293)||(718984-719060)
chr1 (223-277)||(44381917-44381971)
chr1 (319-391)||(44381908-44381981)
chr1 (221-277)||(28045424-28045479)
chr1 (324-391)||(35251165-35251234)
chr1 (221-277)||(50754829-50754884)
chr1 (223-277)||(9379923-9379976)
chr1 (220-289)||(26011735-26011804)
chr1 (243-284)||(33734220-33734261)
chr1 (217-269)||(23332856-23332908)
chr1 (221-277)||(28739311-28739366)
chr1 (217-277)||(32540833-32540893)
chr1 (221-273)||(37155043-37155095)
chr1 (347-391)||(47557385-47557429)
chr1 (324-387)||(49200058-49200122)
chr1 (221-273)||(49200067-49200119)
chr1 (221-272)||(5995366-5995417)
chr1 (396-434)||(32158850-32158889)
chr1 (214-273)||(44291157-44291216)
chr1 (247-285)||(4579191-4579229)
chr1 (351-384)||(9379815-9379848)
chr1 (354-391)||(44801751-44801788)
chr1 (220-272)||(5995459-5995511)
chr1 (221-277)||(9884946-9885001)
chr1 (248-304)||(25061979-25062035)
chr1 (220-304)||(26233689-26233772)
chr1 (217-304)||(44801832-44801917)
chr1 (211-271)||(47557372-47557432)
chr1 (217-273)||(48993910-48993966)
[»] chr7 (18 HSPs)
chr7 (248-389)||(17272723-17272864)
chr7 (223-391)||(43499983-43500148)
chr7 (248-366)||(29681789-29681906)
chr7 (248-303)||(7211884-7211939)
chr7 (253-333)||(7211947-7212027)
chr7 (223-305)||(35418172-35418254)
chr7 (347-392)||(29681896-29681941)
chr7 (221-277)||(17272804-17272859)
chr7 (251-291)||(6980948-6980988)
chr7 (248-304)||(25099327-25099383)
chr7 (221-260)||(29681894-29681933)
chr7 (217-299)||(24532777-24532858)
chr7 (221-277)||(45231935-45231991)
chr7 (248-304)||(46282892-46282949)
chr7 (217-273)||(4290634-4290690)
chr7 (217-273)||(11016958-11017014)
chr7 (251-291)||(42494799-42494839)
chr7 (217-273)||(42628384-42628440)
[»] chr3 (19 HSPs)
chr3 (248-391)||(11512411-11512554)
chr3 (213-357)||(20286893-20287037)
chr3 (248-391)||(22893891-22894033)
chr3 (248-357)||(31342031-31342140)
chr3 (217-384)||(29081592-29081751)
chr3 (217-304)||(48342210-48342296)
chr3 (217-267)||(49159493-49159543)
chr3 (217-304)||(32385436-32385522)
chr3 (221-277)||(22893898-22893953)
chr3 (221-277)||(11512492-11512547)
chr3 (347-392)||(25790897-25790942)
chr3 (326-382)||(29081598-29081655)
chr3 (347-384)||(49159502-49159539)
chr3 (217-273)||(30734491-30734547)
chr3 (221-272)||(51046163-51046214)
chr3 (223-265)||(25790890-25790932)
chr3 (356-393)||(31342130-31342167)
chr3 (220-272)||(1801442-1801494)
chr3 (217-273)||(7977589-7977645)
[»] chr5 (23 HSPs)
chr5 (212-364)||(29385303-29385455)
chr5 (217-373)||(19417438-19417593)
chr5 (220-391)||(5215560-5215723)
chr5 (217-304)||(1839964-1840051)
chr5 (253-392)||(36568733-36568872)
chr5 (248-364)||(9177863-9177979)
chr5 (209-301)||(4376424-4376516)
chr5 (221-305)||(7137638-7137722)
chr5 (221-277)||(5215567-5215622)
chr5 (248-304)||(23219360-23219416)
chr5 (214-273)||(7137753-7137812)
chr5 (347-384)||(19417442-19417479)
chr5 (347-384)||(29385409-29385446)
chr5 (217-273)||(2953279-2953335)
chr5 (223-277)||(9904168-9904222)
chr5 (325-385)||(7137637-7137698)
chr5 (212-273)||(16971233-16971294)
chr5 (248-293)||(42772054-42772099)
chr5 (217-269)||(2356364-2356416)
chr5 (221-273)||(4376347-4376399)
chr5 (230-274)||(19417552-19417595)
chr5 (315-363)||(25879328-25879376)
chr5 (217-273)||(29699456-29699512)
[»] chr6 (15 HSPs)
chr6 (248-391)||(2543735-2543877)
chr6 (256-391)||(11448089-11448224)
chr6 (221-277)||(2543742-2543797)
chr6 (210-275)||(11448164-11448228)
chr6 (248-303)||(369498-369553)
chr6 (353-391)||(16193850-16193888)
chr6 (217-250)||(369440-369473)
chr6 (214-273)||(17750893-17750951)
chr6 (221-267)||(5150626-5150672)
chr6 (250-291)||(178660-178701)
chr6 (355-392)||(369542-369579)
chr6 (217-291)||(2913919-2913995)
chr6 (347-392)||(5150618-5150663)
chr6 (354-391)||(28581731-28581768)
chr6 (212-252)||(16193850-16193890)
[»] scaffold0001 (1 HSPs)
scaffold0001 (228-304)||(507720-507796)
[»] scaffold0343 (3 HSPs)
scaffold0343 (217-304)||(12285-12369)
scaffold0343 (335-392)||(12225-12283)
scaffold0343 (221-267)||(12233-12279)
[»] scaffold0586 (1 HSPs)
scaffold0586 (209-273)||(7136-7199)
[»] scaffold0047 (1 HSPs)
scaffold0047 (353-391)||(13402-13440)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 42348109 - 42347916
Alignment:
Q  20 atcatccatccaccaattaaatatattgtattattataccgatcatatatcaaaatagtttatagctatgtacatgtgttgattggtaaggtaaggttgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42348109 atcatccatccaccaattaaatatattgtattattataccgatcatatatcaaaatagtttatagctatgtacatgtgttgattggtaaggtaaggttgg 42348010  T
Q  120 taaatctccaccnnnnnnnnnnnngtaaagagaatcaggtgtggggaaagagggaatggttggtgacaaatgccagagcgcaggtgaagttttc 213  Q
    ||||||||||||            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42348009 taaatctccaccaaaaaagaaaaagtaaagagaatcaggtgtggggagagagggaatggttggtgacaaatgccagagcgcaggtgaagttttc 42347916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 250 - 391
Target Start/End: Original strand, 43465112 - 43465256
Alignment:
Q  250 ggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggt---tggt 346  Q
    |||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |       |||||||||||||||||||||||| ||||   ||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtggctttcttctttttttttcacaagatttttttgttgttttgcacacttgtaacattgtggtggttggt 43465211  T
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||| ||||||||||||||||||| ||| ||| |||||||||||||    
T  43465212 aatttcaccaatgtcaccaaccagaatgtcatccaagtattatcc 43465256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 392
Target Start/End: Original strand, 31470738 - 31470914
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    |||| ||||||||||||| |||||| | |||||| |||||||| ||||||||||||| ||| ||  | |||||||||||||||||||| |       |||    
T  31470738 tagcgcttgggtgacattatggttggtaacattg-tgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttttgtt 31470836  T
Q  317 gttttgcacacttgtaacattatggttgg-taatgtcaccaatgtcaccaaccacaatatca-cccaagtattatcca 392  Q
      |||| |||||||| ||||| |||||||  ||||||||||||  ||||||||||||||||| |||||||||||||||    
T  31470837 tctttgtacacttgtgacattgtggttggccaatgtcaccaataccaccaaccacaatatcaccccaagtattatcca 31470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 32857131 - 32857081
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  32857131 ttgggtgatattgtggttgatgacattgatgacataggccaaccacaatgt 32857081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 5667084 - 5667146
Alignment:
Q  211 ttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||| ||||||||||||||||| | | | |||||||||||||||||||| ||| ||||||||    
T  5667084 ttcgggtagcacttgggtgacatagagttggatgacattggtgacattggtcaatcacaatgt 5667146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 16687557 - 16687512
Alignment:
Q  346 taatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  16687557 taatgtcaccaatatcaccaaccacaatgtcatccaagtattatcc 16687512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 5667238 - 5667186
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||| | | ||||||||||||||||||||||||||  |||||||    
T  5667238 acttgggtgacatagagtttgatgacattggtgacattggccaattacaatgt 5667186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 16687519 - 16687571
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||| |||||||||||||| ||| |||||||||||| || |||||||||||    
T  16687519 acttggatgacattgtggttggtgatattggtgacattagctaaccacaatgt 16687571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 31470901 - 31470853
Alignment:
Q  225 gggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||| |||||||||| ||  |||||||||||||||||||||||||||    
T  31470901 gggtgatattgtggttggtggtattggtgacattggccaaccacaatgt 31470853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 1605075 - 1605038
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacatt 258  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  1605075 acttgggtgacattgtagttggtgacattggtgacatt 1605038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 32857067 - 32857136
Alignment:
Q  319 tttgcacacttgtaacattatggttggta-atgtcaccaatgtcaccaaccacaatatcacccaagtatt 387  Q
    |||| |||||||| ||||| |||||||   |||||| |||||||| ||||||||||||||||||| ||||    
T  32857067 tttgtacacttgtgacattgtggttggcctatgtcatcaatgtcatcaaccacaatatcacccaaatatt 32857136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 5033306 - 5033250
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | ||||||||||||||||| |||| ||||||||    
T  5033306 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 5033250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 43844622 - 43844558
Alignment:
Q  209 ttttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||| ||||||||||| | | | |||||||||||||| ||||  ||| ||||||||    
T  43844622 ttttcggatagcaattgggtgacatagagttggatgacattggtgatattgatcaatcacaatgt 43844558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 217 - 391
Target Start/End: Original strand, 39819056 - 39819230
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |       |||    
T  39819056 tagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgtt 39819155  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39819156 gttttgcacacttgtaatattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 226 - 391
Target Start/End: Original strand, 12918535 - 12918700
Alignment:
Q  226 ggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcac 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |       ||||||||||||    
T  12918535 ggtgacattgtggttgatgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttctttcataagacttttttgttgttttgcac 12918634  T
Q  326 acttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12918635 atttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 15562232 - 15562371
Alignment:
Q  252 tgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggtaatgt 351  Q
    |||||||||||||||||||||| ||||||| |||||||||||||  |||||   |       |||||||||||||||||||||||| || ||||||||||    
T  15562232 tgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgttttgcacacttgtaacattgtgattggtaatgt 15562331  T
Q  352 caccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||| |||||||||| ||| |||||||| ||||||||    
T  15562332 caccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 357
Target Start/End: Original strand, 7755360 - 7755469
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||| |       ||||||||| |||||||||||||| || ||||||    
T  7755360 ttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttgtacacttgtaacattgtgattggta 7755459  T
Q  348 atgtcaccaa 357  Q
    ||||||||||    
T  7755460 atgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 5913521 - 5913602
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcac 302  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||  || ||||||||||| ||||||||    
T  5913521 cacttgggtgacattgtggttggtgacattg-tgacattggccaaccacaatcttacaaatgtctttcttctttctctttcac 5913602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 379
Target Start/End: Complemental strand, 13421823 - 13421692
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||| |||||||||| |||||||||| ||||||| ||||||||| || | |       ||||||||  ||| ||| ||||||||  ||| ||    
T  13421823 ttggtgacattgaccaaccacaacgttacatgtgactttcttttttttcttttacgagatttttttgttgttttatacatttgaaacattataattgata 13421724  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacc 379  Q
    |||||| |||||||||||||||| || |||||    
T  13421723 atgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 12918693 - 12918638
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  12918693 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatgttaca 12918638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 39819223 - 39819168
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||    
T  39819223 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatattaca 39819168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcaccc-aagtattatcc 391  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 39819097 - 39819060
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  39819097 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 12918508 - 12918544
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattg 259  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12918508 ttgggtgacattgtggttggtgacattggtgacattg 12918544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 32545937 - 32545877
Alignment:
Q  213 cggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||||||| | | ||  |||||||||||||||||||||| || |||||    
T  32545937 cggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgt 32545877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 30610292 - 30610233
Alignment:
Q  246 cattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaa 305  Q
    |||||||||||||||||||||| ||||| ||||||| |||| |||| | |||||| ||||    
T  30610292 cattggtgacattggccaaccataatgtcacatgtgacttttttctgtctctttcgcaaa 30610233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 6884901 - 6884947
Alignment:
Q  459 ttaaaaatagagaaataatatttgtacatttaatttgcgataacttt 505  Q
    |||||||||||||||| |||||||||||  ||||||| |||||||||    
T  6884901 ttaaaaatagagaaatgatatttgtacaactaatttgtgataacttt 6884947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 14892410 - 14892345
Alignment:
Q  212 tcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||| ||||| ||||||||||| | | | |||||||||||||||||||  ||| ||||||||||||    
T  14892410 tcgggtagcatttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttaca 14892345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 44000783 - 44000836
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||| ||| || ||||||| |||||||||| ||| ||||||||||||    
T  44000783 cacttgggtgatattatgattgatgatattggtgacactggtcaaccacaatgt 44000836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 5095784 - 5095756
Alignment:
Q  356 aatgtcaccaaccacaatatcacccaagt 384  Q
    |||||||||||||||||||||||||||||    
T  5095784 aatgtcaccaaccacaatatcacccaagt 5095756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 5095877 - 5095822
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||  ||||||| || |||| ||| |||||||||||||||||||||||||||    
T  5095877 tagcactttagtgacat-gtagttggtgatattggtgacattggccaaccacaatgt 5095822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 14470582 - 14470642
Alignment:
Q  214 ggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgtt 274  Q
    |||||||||||| ||||||| | | | | ||||||||||||||||| |||| |||||||||    
T  14470582 ggatagcacttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgtt 14470642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 18182631 - 18182591
Alignment:
Q  251 gtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  18182631 gtgacattggcaaaccacaatgtcacaagtggctttcttct 18182591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 31846956 - 31846782
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |       |||    
T  31846956 tagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgtt 31846857  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  31846856 gttttgcacacttgtaacattttggttggtaatgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 218 - 391
Target Start/End: Original strand, 31012121 - 31012294
Alignment:
Q  218 agcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttg 317  Q
    |||||||| ||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||||         ||||    
T  31012121 agcacttgtgtgacattgtggttggtgataatggtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttttgttg 31012220  T
Q  318 ttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  31012221 ttttgcatacttgtaatattgtggttggtaatgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 250 - 357
Target Start/End: Complemental strand, 6607527 - 6607420
Alignment:
Q  250 ggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggtaat 349  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |       |||||||||||||||||||||||| |||||||||||    
T  6607527 ggtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggtaat 6607428  T
Q  350 gtcaccaa 357  Q
    ||||||||    
T  6607427 gtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 250 - 373
Target Start/End: Original strand, 6608375 - 6608498
Alignment:
Q  250 ggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggtaat 349  Q
    |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||| | |        ||||||||||| |||||||||||| |||||||||||    
T  6608375 ggtgacattggccaaccataatgtcacacgtggcttccttctttttctttcaaagattctttttgttgttttgcagacttgtaacattgtggttggtaat 6608474  T
Q  350 gtcaccaatgtcaccaaccacaat 373  Q
    ||||||||||||||||||||||||    
T  6608475 gtcaccaatgtcaccaaccacaat 6608498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 390
Target Start/End: Original strand, 2254529 - 2254698
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||| |||||| ||||| |||||| ||| |||| |||||||| ||||||||||||| ||||||| |||| || |||||| ||    | |       |||    
T  2254529 tagcatttgggtcacattatggttggtgatattgatgacattgaccaaccacaatgtcacatgtgacttttttttttttcatt----agacttttttgtt 2254624  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatc 390  Q
    |||||| |||||||||||||| || |||||||| ||| ||||||||| ||||||||| ||||  ||||||||||    
T  2254625 gttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 32008398 - 32008325
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttcttt 293  Q
    |||||||||||||||||||||| ||||||| |||| |||| ||||||| ||||||||| ||| |||||||||||    
T  32008398 cacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttcttt 32008325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 15031959 - 15032020
Alignment:
Q  210 tttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaat 271  Q
    ||||| ||| |||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  15031959 tttcgaataacacttgggtgacattgtggttgatgatattcgtgacattgaccaaccacaat 15032020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 43063533 - 43063598
Alignment:
Q  239 ttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| ||  ||||||||||||    
T  43063533 ttgatgacattggtgacattagccaaccacaatgtcacaagtggctttcatcactttctttcacaa 43063598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 46321500 - 46321444
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||    
T  46321500 tagcacttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgt 46321444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 32008336 - 32008402
Alignment:
Q  324 acacttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagtattat 389  Q
    |||||||||||||| |||||||| ||| |||| |||||||||||||||||| |||||||||| ||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 54613030 - 54613082
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgt 54613082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 11392299 - 11392337
Alignment:
Q  213 cggatagcacttgggtgacattgtggttgatgacattgg 251  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  11392299 cggatagcacttgggtgacattgtggttgatgaaattgg 11392337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 33380778 - 33380704
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    |||||||||| |||||||||||||| ||| ||| |||||||| | |||||| ||||| | | |||||||||||||    
T  33380778 tagcacttggatgacattgtggttggtgatatttgtgacatttgtcaaccataatgtcataagtggctttcttct 33380704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 44023092 - 44023033
Alignment:
Q  226 ggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggcttt 286  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||||||||| ||| ||||    
T  44023092 ggtgacattgtggtgg-tgacattagtgacattgaccaaccacaatgttacaagtgacttt 44023033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 6608500 - 6608454
Alignment:
Q  230 acattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  6608500 acattgtggttggtgacattggtgacatt-accaaccacaatgttaca 6608454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  318 ttttgcacacttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||| ||| |||| ||||| |||||||| |||||||||||| |||||||||||||| |||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 53261253 - 53261171
Alignment:
Q  218 agcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggc-tttcttctttttctttc 300  Q
    ||||||||||||| |||||||||| ||||||| |||| |||||||||||| ||  | ||| ||||| |||||||||| ||||||    
T  53261253 agcacttgggtgaaattgtggttggtgacatt-gtgatattggccaaccataacatcacaagtggcttttcttctttctctttc 53261171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 273
Target Start/End: Complemental strand, 30710043 - 30709989
Alignment:
Q  219 gcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||| | | | | |||||||||||||||||||||| ||||||||    
T  30710043 gcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgt 30709989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 9712984 - 9712943
Alignment:
Q  250 ggtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    |||||||||| ||||||||||||| ||| |||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 31846919 - 31846952
Alignment:
Q  351 tcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||||||||||||||||||||| ||||||||||    
T  31846919 tcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 53937888 - 53937949
Alignment:
Q  212 tcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||| ||||||||| || |||||||||||  ||||||| |||| |||| |||||||||||||    
T  53937888 tcgggtagcacttgagtaacattgtggttagtgacattagtgatattgaccaaccacaatgt 53937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 22435379 - 22435419
Alignment:
Q  251 gtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  22435379 gtgacattggcaaaccacaatgtcacaagtggctttcttct 22435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 31012287 - 31012232
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||| |||||||||||||||| ||||||| ||||||||  ||||||||||| |||||    
T  31012287 acttaggtgacattgtggttggtgacattagtgacatt-accaaccacaatattaca 31012232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 31846789 - 31846844
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||||||| |||||| ||||||| ||||||||  ||||||| |||||||||    
T  31846789 acttgggtgacattatggttggtgacattcgtgacatt-accaaccaaaatgttaca 31846844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 32139866 - 32139818
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaat 271  Q
    ||||||||||||||||||||||| |||| || ||||| ||||| |||||    
T  32139866 ttgggtgacattgtggttgatgaaattgatggcattgaccaacaacaat 32139818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 35682159 - 35682215
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | ||| |||||||||||||||||| ||||||||    
T  35682159 tagcacttgggtgacatagagttaggtgatattggtgacattggccaatcacaatgt 35682215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 54223577 - 54223629
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttc 300  Q
    |||||||||||| ||||||||||||| |||  || ||||||||||| ||||||    
T  54223577 ttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctctttc 54223629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  333 acattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||| |||||||| |||| ||| |||||||||||||||||| ||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 391
Target Start/End: Original strand, 9379811 - 9379985
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    |||||||||||||| || ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |       |||    
T  9379811 tagcacttgggtgatatcgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgtt 9379910  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  9379911 gttttgcacacttgtaacattgtggttggtaatgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 217 - 391
Target Start/End: Original strand, 9884834 - 9885008
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    |||||||| |||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |       |||    
T  9884834 tagcactttggtgacatagtggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgtt 9884933  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  9884934 gttttgcacacttgtaacattgtggttgataatgtcacgaatgtcaccaaccacaatatcacccaagtatcatcc 9885008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 394
Target Start/End: Original strand, 50754748 - 50754894
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |       |||||||||||||||||||||||| |||||| ||    
T  50754748 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttgcacacttgtaacattgtggttgata 50754847  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattatccaat 394  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  50754848 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatccaat 50754894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 28739447 - 28739304
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |       ||| |||||||||||||||||||| |||||||||    
T  28739447 ttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttgcacacttgtaacattgtggttggta 28739348  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  28739347 atgtcaccaatatcaccaaccacaatatcacccaagtattatcc 28739304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 6539724 - 6539546
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |       |||    
T  6539724 tagcacttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgtt 6539625  T
Q  317 gttttgcacacttgtaacattatggttggta-----atgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| |||||||||     || |||||||||| |||||||||||| |||  ||||||||||||    
T  6539624 gttttgcacacttgtaacattgtggttggtaacatcatatcaccaatgttaccaaccacaatgtca-gcaagtattatcc 6539546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 28045350 - 28045486
Alignment:
Q  256 attggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt-gttttgcacacttgtaacattatggttggtaatgtcac 354  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| |||| |        || |||||| |||||||||||||| ||||||||||||||||    
T  28045350 attggccaaccataatgtcacaagtggctttcttctttttctttaacaagattttcttttttgttttgtacacttgtaacattgtggttggtaatgtcac 28045449  T
Q  355 caatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28045450 caatgtcaccaaccacaatgtcacccaagtattatcc 28045486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 15928204 - 15928097
Alignment:
Q  252 tgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa-aannnnnnngttgttttgcacacttgtaacattatggttggtaatg 350  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |        ||||||||| |||||||||||||| |||||| |||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatg 15928105  T
Q  351 tcaccaat 358  Q
    ||||||||    
T  15928104 tcaccaat 15928097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 391
Target Start/End: Complemental strand, 10449612 - 10449447
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    |||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||| |||  |  ||||||||||| |||||||||| |       |||    
T  10449612 tagcacttggatgacattgtggttggtgacattg-tgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttttgtt 10449514  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
      |||| |||||||| ||||| ||||||||        ||||||||||||||||||| |||||||||||||||||    
T  10449513 tctttgtacacttgtgacattgtggttggt--------caatgtcaccaaccacaatgtcacccaagtattatcc 10449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 44938959 - 44938871
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaa 305  Q
    ||||||||||||||||||||| ||  ||||||| |||||||||  ||||||||||| |||| ||||||||||||||| |||||||||||    
T  44938959 tagcacttgggtgacattgtgattagtgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaa 44938871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 32158853 - 32158792
Alignment:
Q  455 taagttaaaaatagagaaataatatttgtacatttaatttgcgataactttctccttcatac 516  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  32158853 taagttaaaagtagagaaataatatttgtacatttaatctgtgataactttctctttcatac 32158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 718984 - 719060
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttcttt 293  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||| |||||||||||| ||| |||||||| ||||||    
T  718984 tagcacttgagtgacattgtggttggtgacattggcggcattggacaaccacaatgtcacaagtggcttttttcttt 719060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 44381917 - 44381971
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  44381917 ttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgttaca 44381971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 44381981 - 44381908
Alignment:
Q  319 tttgcacacttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||| |||| ||||||||| |||||||| |||||||||||| |||||||||||||| |||||||| ||||||||    
T  44381981 tttgtacacgtgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcc 44381908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 28045479 - 28045424
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  28045479 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatgttaca 28045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 35251234 - 35251165
Alignment:
Q  324 acacttgtaacattatggttggtaatgtcaccaatgtcaccaaccaca--atatcacccaagtattatcc 391  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |  || ||| |||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 50754884 - 50754829
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||    
T  50754884 acttgggtgacattgtggttggtgacattggtgacatt-atcaaccacaatgttaca 50754829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 9379976 - 9379923
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||| |||||||||| |||||  |||||||||||||||||    
T  9379976 ttgggtgacattgtggttggtgacattggtaacatt-accaaccacaatgttaca 9379923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 26011804 - 26011735
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttctt 289  Q
    |||||| |||||||| | | || ||||||||||||||||| ||||||||||| | ||| |||||||||||    
T  26011804 cacttgagtgacattatagatggtgacattggtgacattgaccaaccacaatataacaagtggctttctt 26011735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 33734220 - 33734261
Alignment:
Q  243 tgacattggtgacattggccaaccacaatgttacatgtggct 284  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  33734220 tgacattggtgacattggccaaccacaatattacaagtggct 33734261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 23332856 - 23332908
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccaca 269  Q
    ||||||||| |||||||||||||||||||| ||| |||||| | |||||||||    
T  23332856 tagcacttgagtgacattgtggttgatgactttgatgacatcgaccaaccaca 23332908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 28739311 - 28739366
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||| |||||||||| ||| ||||||||||||  |||||||||||||||||    
T  28739311 acttgggtgatattgtggttggtgatattggtgacatt-accaaccacaatgttaca 28739366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 32540893 - 32540833
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||| |   | ||||||||||||||||||| |||| ||||||||||||    
T  32540893 tagcacttgggtgacatagaattggatgacattggtgacattgaccaatcacaatgttaca 32540833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 37155043 - 37155095
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||| | | ||| |||||||||||||||||||||| ||||||||    
T  37155043 acttgggtgacatagagtttggtgacattggtgacattggccaatcacaatgt 37155095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 47557385 - 47557429
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  47557385 aatgtcaccaatgtcaccaaccgcaatttcacctaagtattatcc 47557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 387
Target Start/End: Original strand, 49200058 - 49200122
Alignment:
Q  324 acacttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagtatt 387  Q
    |||||||| ||||| |||||||| ||||||| |||| |||||||||||||| ||||| |||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 49200119 - 49200067
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||| |||||||||||||||| ||| |||| |||||||| |||||||||||||    
T  49200119 acttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgt 49200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Original strand, 5995366 - 5995417
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatg 272  Q
    ||||||||||||| | | |||||||||||||| ||||||||||| |||||||    
T  5995366 acttgggtgacatagagtttgatgacattggtaacattggccaatcacaatg 5995417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 32158889 - 32158850
Alignment:
Q  396 tactcataagtcaa-caaataaataattcccttgtttaag 434  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  32158889 tactcataagtcaaacaaataaataattcccttgtttaag 32158850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 44291216 - 44291157
Alignment:
Q  214 ggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||| ||||| | |||||||||||| | | |||||||||||||| ||||||||||||    
T  44291216 ggatagcgcttggataacattgtggttggttatattggtgacattggtcaaccacaatgt 44291157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 4579191 - 4579229
Alignment:
Q  247 attggtgacattggccaaccacaatgttacatgtggctt 285  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  4579191 attggtgacattggccaaccacaatgtcacaagtggctt 4579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 9379848 - 9379815
Alignment:
Q  351 tcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    |||||||||||||||||||| |||||||||||||    
T  9379848 tcaccaatgtcaccaaccacgatatcacccaagt 9379815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 44801788 - 44801751
Alignment:
Q  354 ccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  44801788 ccaatgtcatcaaccacaatatcacctaagtattatcc 44801751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 5995511 - 5995459
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatg 272  Q
    |||||||||||||| | | | ||||||||||||||||||| |||| |||||||    
T  5995511 cacttgggtgacatagagttggatgacattggtgacattgaccaatcacaatg 5995459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 9885001 - 9884946
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||| |||||||||| ||||||| ||||||||  | |||||||||||||||    
T  9885001 acttgggtgatattgtggttggtgacattcgtgacattatc-aaccacaatgttaca 9884946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 25061979 - 25062035
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    ||||||||||||| ||| || ||| |||||||||||||| || ||| ||||||||||    
T  25061979 ttggtgacattggtcaatcagaatcttacatgtggcttttttgtttctctttcacaa 25062035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 26233689 - 26233772
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||||||||||| | ||||||| |||| ||| |||| ||||||||||||||| | |||  |||||| |||||  |||||||    
T  26233689 cacttgggtgacattg-gattgatgatattgatgatattgaccaaccacaatgttataagtgattttctttttttttcttcacaa 26233772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 44801917 - 44801832
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||||| |||||||||||||| ||||||||   || ||| ||||||| ||| | |||  || ||||||||||| ||||||||||    
T  44801917 tagcacttggatgacattgtggttggtgacattg--tacgttgaccaaccataatatcacaaatgtctttcttctttctctttcacaa 44801832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 47557432 - 47557372
Alignment:
Q  211 ttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaat 271  Q
    ||||||||  |||| ||||| |||| ||||| |||||||||||||||||  ||||||||||    
T  47557432 ttcggataatacttaggtgaaattgcggttggtgacattggtgacattgatcaaccacaat 47557372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 48993910 - 48993966
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | ||||||||||||||||| |||| ||||||||    
T  48993910 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 48993966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 248 - 389
Target Start/End: Original strand, 17272723 - 17272864
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |       |||||||||||||||||||||||| |||||||||    
T  17272723 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 17272822  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattat 389  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  17272823 atgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 391
Target Start/End: Original strand, 43499983 - 43500148
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttg 322  Q
    |||||| |||||||||||| ||||||| |||| ||||| ||| |||||||| |||| || | ||||||||||||||||||||         |||||||||    
T  43499983 ttgggtaacattgtggttggtgacattagtgatattggtcaatcacaatgtcacatatgacattcttctttttctttcacaa--tttttttgttgttttg 43500080  T
Q  323 cacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
     ||  |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||    
T  43500081 tact-ttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 248 - 366
Target Start/End: Original strand, 29681789 - 29681906
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    ||||||||||||||||||||||| || |||||||||||| || ||||| ||| |||| |       |||||||| ||||||||||||||| |||||||||    
T  29681789 ttggtgacattggccaaccacaacgtcacatgtggctttttttttttttttt-acaagatatttttgttgttttacacacttgtaacattgtggttggta 29681887  T
Q  348 atgtcaccaatgtcaccaa 366  Q
    |||||||||||||||||||    
T  29681888 atgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 7211884 - 7211939
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcaca 303  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7211884 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 7212027 - 7211947
Alignment:
Q  253 gacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaa 333  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |       ||||||||||||||||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttttgttgttttgcacacttgtaa 7211947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 35418172 - 35418254
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaa 305  Q
    |||| |||||||||||||||| |||||| ||||||||| |||||||||| | ||||||| |||||| |||||||||| |||||    
T  35418172 ttggatgacattgtggttgataacattgatgacattggtcaaccacaatatcacatgtgactttctcctttttcttttacaaa 35418254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 29681896 - 29681941
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29681896 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcca 29681941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 17272859 - 17272804
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  17272859 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatgttaca 17272804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 6980988 - 6980948
Alignment:
Q  251 gtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttct 6980948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 25099383 - 25099327
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||    
T  25099383 ttggtgactttggtcaaccacaatgtcacaagtgtctttcttctttttctttcacaa 25099327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 29681933 - 29681894
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattgg 260  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  29681933 acttgggtgacattgtggttggtgacattggtgacattgg 29681894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 24532858 - 24532777
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttcttt 299  Q
    |||||||||||| |||||||||||| ||||| | |||||||||  |||||||||||| ||| ||| | ||||||||| |||||    
T  24532858 tagcacttgggtaacattgtggttggtgacact-gtgacattgatcaaccacaatgtcacaagtgtccttcttctttctcttt 24532777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 45231991 - 45231935
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||| | | | | |||||||||||||||||||||| ||||||||||||    
T  45231991 acttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgttaca 45231935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 46282892 - 46282949
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtgg-ctttcttctttttctttcacaa 304  Q
    |||||||||||||||||||||||| | ||| ||||  |||||||||| ||||||||||    
T  46282892 ttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaa 46282949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 4290690 - 4290634
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||||||||||||||   | | | |||||||||||||||||||||| ||||||||    
T  4290690 tagcacttgggtgacatacagttgggtgacattggtgacattggccaatcacaatgt 4290634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 11017014 - 11016958
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | ||||||||||||||||| |||| ||||||||    
T  11017014 tagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 11016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 42494799 - 42494839
Alignment:
Q  251 gtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  42494799 gtgacattggcaaaccacaatgtcacaagtggctttcttct 42494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 42628440 - 42628384
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | |||||||||||| ||||||||| ||||||||    
T  42628440 tagcacttgggtgacatagagttgggtgacattggtgatattggccaatcacaatgt 42628384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 248 - 391
Target Start/End: Original strand, 11512411 - 11512554
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |       | |||||||||||||||||||||| |||||||||    
T  11512411 ttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgttttgcacacttgtaacattgtggttggta 11512510  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  11512511 atgtcaccaatgtcaccaaccataatgtcacccaagtattatcc 11512554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 357
Target Start/End: Original strand, 20286893 - 20287037
Alignment:
Q  213 cggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnn 312  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| |          
T  20286893 cggatatcacttgggtgacattatggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagacttttt 20286992  T
Q  313 ngttgttttgcacacttgtaacattatggttggtaatgtcaccaa 357  Q
     |||||||||||||||||||||||| |||||||||||||||||||    
T  20286993 tgttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 22894033 - 22893891
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||| ||||||||||||| ||| ||| ||||||||||||||||| |||| |       ||||||||| |||||||||||||| |||||||||    
T  22894033 ttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt-gttgttttgtacacttgtaacattgtggttggta 22893935  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  22893934 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 22893891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 248 - 357
Target Start/End: Original strand, 31342031 - 31342140
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |       |||||||||||||||||||||||| |||||||||    
T  31342031 ttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtggttggta 31342130  T
Q  348 atgtcaccaa 357  Q
    ||||||||||    
T  31342131 atgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 217 - 384
Target Start/End: Original strand, 29081592 - 29081751
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||| || |||||||||||| | ||||| |||         ||    
T  29081592 tagcatttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttctttctttttcataaagtttttttttt 29081691  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
     ||||| |||||||| ||||| ||||||        ||||||||||||||||||||||||||||||||    
T  29081692 tttttgtacacttgtgacattgtggttg--------accaatgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 48342210 - 48342296
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||  ||||||| |||||||| || ||||| ||||    
T  48342210 tagcacttgggtgacattgtggttggtgacatt-gtgacattagccaaccacaatgccacatgtgtctttcttcattctcttttacaa 48342296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 49159543 - 49159493
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaacca 267  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49159543 tagcacttgggtgacattgtggttggtgacattggtgacattggccaacca 49159493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 32385522 - 32385436
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||| ||||| |||||||||||||| |||| ||| |||||||||||||||||||| | |||  |||||||||| ||||||||||    
T  32385522 tagcacttaggtgatattgtggttgatgatattg-tgatattggccaaccacaatgttaaaagtgtttttcttctttctctttcacaa 32385436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 22893898 - 22893953
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  22893898 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatgttaca 22893953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 11512547 - 11512492
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||    
T  11512547 acttgggtgacattatggttggtgacattggtgacatt-accaaccacaatgttaca 11512492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 25790897 - 25790942
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcca 25790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 29081655 - 29081598
Alignment:
Q  326 acttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaa 382  Q
    |||||| ||||| |||||||| ||||||||| ||||||||||||||||| ||||||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 30734547 - 30734491
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | |||||||||||||||||||||| ||||||||    
T  30734547 tagcacttgggtgacatagagttaggtgacattggtgacattggccaatcacaatgt 30734491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 51046214 - 51046163
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatg 272  Q
    ||||||||||||| | | | |||||||||||||||||||||||| |||||||    
T  51046214 acttgggtgacatagagttggatgacattggtgacattggccaatcacaatg 51046163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 265
Target Start/End: Complemental strand, 25790932 - 25790890
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaac 265  Q
    |||||||||||| |||||| ||||||||||||||||| |||||    
T  25790932 ttgggtgacattatggttggtgacattggtgacattgaccaac 25790890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 31342130 - 31342167
Alignment:
Q  356 aatgtcaccaaccacaatatcacccaagtattatccaa 393  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  31342130 aatgtcaccaaccacaatgtcacccaaatattatccaa 31342167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 1801442 - 1801494
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatg 272  Q
    |||||||||||||| | | | | |||||||||||||||||||||| |||||||    
T  1801442 cacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatg 1801494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 7977645 - 7977589
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||| |||||||||||| |   |||||||||||| ||| ||||||||||||||||||    
T  7977645 tagcgcttgggtgacatagaatttgatgacattgatgatattggccaaccacaatgt 7977589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 29385455 - 29385303
Alignment:
Q  212 tcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnn 311  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | |         
T  29385455 tcgggtagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcgctagattttt 29385356  T
Q  312 nngttgttttgcacacttgtaacattatggttggtaatgtcaccaatgtcacc 364  Q
      |||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  29385355 ttgttgttttgcacacttgtaacattgtggttggtaatatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 19417438 - 19417593
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngtt 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||| |||||||  ||||||||||||| |       |||    
T  19417438 tagcacttgggtgacattgtggttggtgacattggtgacattggtcaactacaatgtcacatgtgactttctttcttttctttcacaagatttttttgtt 19417537  T
Q  317 gttttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaat 373  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19417538 gttttgcacacttg-aacattgtggttggtaatgtcaccaatgtcaccaaccacaat 19417593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 220 - 391
Target Start/End: Complemental strand, 5215723 - 5215560
Alignment:
Q  220 cacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggcttt-cttctttttctttcacaaaannnnnnngttgt 318  Q
    |||||||||||||||||||||||||||||||||         |||||||||| | |||||||||||| ||| |||||||||||||| |       |||||    
T  5215723 cacttgggtgacattgtggttgatgacattggt---------caaccacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgt 5215633  T
Q  319 tttgcacacttgtaacattatggttggtaatgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  5215632 tttgtacacttgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 1839964 - 1840051
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1839964 tagcaattgggtgacattgtggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaa 1840051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 253 - 392
Target Start/End: Original strand, 36568733 - 36568872
Alignment:
Q  253 gacattggccaaccacaa-tgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggtaatgt 351  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||||||||||||| |       ||||||||| |||||||||||||| |||||| | ||||    
T  36568733 gacattggtcaaccacaaatgtcacatgtggctttcttccttttctttcacaatatttttt-gttgttttgtacacttgtaacattgtggttgattatgt 36568831  T
Q  352 caccaatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    ||| |||||||||||||||||| ||||  ||||||||||||    
T  36568832 cactaatgtcaccaaccacaatgtcacataagtattatcca 36568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 364
Target Start/End: Complemental strand, 9177979 - 9177863
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    ||||||| |||||||||||||||| | ||||||| |||||||||||||||||||||| |        ||||||||||||||| ||||||| |||||||||    
T  9177979 ttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttttgcacacttataacattgtggttggta 9177880  T
Q  348 atgtcaccaatgtcacc 364  Q
     ||||| ||||||||||    
T  9177879 gtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 4376516 - 4376424
Alignment:
Q  209 ttttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttca 301  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||| |||  ||| |||||||||| |||||||    
T  4376516 ttttcgggtagcacttgagtgacattgtggttgatgacattggtgacaatgaccaacaacaatgtcacaaatggttttcttctttctctttca 4376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 7137638 - 7137722
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaa 305  Q
    |||||||||||||||  |||| ||| ||||||||||||| ||||||||||||| ||| ||| |||||||| || |||||||||||    
T  7137638 acttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaaa 7137722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 5215567 - 5215622
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| | ||||||||||||||  |||||||||||||||||    
T  5215567 acttgggtgacattgtggttggtaacattggtgacatt-accaaccacaatgttaca 5215622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 23219416 - 23219360
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||| ||||||||||||||||| | || || ||||||||||||||||||||||    
T  23219416 ttggtgaccttggccaaccacaatgtcatatatgactttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 7137812 - 7137753
Alignment:
Q  214 ggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||||||| | |||| ||||||||  |||||||| ||||||||||||    
T  7137812 ggatagcacttgggtgacattatagttggtgacattgacgacattggtcaaccacaatgt 7137753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 29385409 - 29385446
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagt 384  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29385409 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 2953335 - 2953279
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | |||||||||||||||||||||| ||||||||    
T  2953335 tagcacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgt 2953279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 9904168 - 9904222
Alignment:
Q  223 ttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    |||||||||||| |||||| |||||||||| | ||||  ||||||||||||||||    
T  9904168 ttgggtgacattatggttgttgacattggtaatattgatcaaccacaatgttaca 9904222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 7137698 - 7137637
Alignment:
Q  325 cacttgtaacattatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagta 385  Q
    ||||||| ||||| |||||||| |||||||||||| ||||||||  |||| |||||||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 16971294 - 16971233
Alignment:
Q  212 tcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||| ||||||||||||||||| | | | | ||||||||||||||||| |||| ||||||||    
T  16971294 tcgggtagcacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 16971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 42772099 - 42772054
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttcttt 293  Q
    |||||||||||| ||||||||||||| ||| ||| |||||||||||    
T  42772099 ttggtgacattgaccaaccacaatgtcacaagtgtctttcttcttt 42772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 2356416 - 2356364
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccaca 269  Q
    ||||||||| ||||||| | | | |||||||||||||||||||||||| ||||    
T  2356416 tagcacttgtgtgacatagagttggatgacattggtgacattggccaatcaca 2356364  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 4376347 - 4376399
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||| ||||||||||||||| | ||||| ||| |||||| ||||||||||||    
T  4376347 acttgagtgacattgtggttggtaacattcgtgccattggtcaaccacaatgt 4376399  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 19417595 - 19417552
Alignment:
Q  230 acattgtggttgatgacattggtgacattggccaaccacaatgtt 274  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||    
T  19417595 acattgtggttggtgacattggtgacatt-accaaccacaatgtt 19417552  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 25879376 - 25879328
Alignment:
Q  315 ttgttttgcacacttgtaacattatggttggtaatgtcaccaatgtcac 363  Q
    |||||||  |||||||||||||| |||||| ||||||||||||| ||||    
T  25879376 ttgttttatacacttgtaacattgtggttgataatgtcaccaatatcac 25879328  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 29699512 - 29699456
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    ||||||||||||||||| | | | | ||| |||||||||||||||||| ||||||||    
T  29699512 tagcacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgt 29699456  T

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Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 2543877 - 2543735
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggta 347  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||||||||||        |||||||| ||||||||||||||| |||||||||    
T  2543877 ttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaaa-tttttttgttgttttacacacttgtaacattgtggttggta 2543779  T
Q  348 atgtcaccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  2543778 atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 2543735  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 256 - 391
Target Start/End: Original strand, 11448089 - 11448224
Alignment:
Q  256 attggccaaccacaatgttacatgtggctttcttctttttctttcacaaaannnnnnngttgttttgcacacttgtaacattatggttggtaatgtcacc 355  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||||        |||||||||||||||| ||||||| |||||||||||||||||    
T  11448089 attggccaaccacaatgttatatgtagcttttttctttttctttcacaaattttttttgttgttttgcacacttataacattgtggttggtaatgtcacc 11448188  T
Q  356 aatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||| |||||||||||||| |||||||||||||||||    
T  11448189 aatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 277
Target Start/End: Original strand, 2543742 - 2543797
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttaca 277  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  2543742 acttgggtgacattgtggttggtgacattggtgacatt-accaaccacaatgttaca 2543797  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 11448228 - 11448164
Alignment:
Q  210 tttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgtta 275  Q
    |||||||||  ||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||    
T  11448228 tttcggataatacttgggtgacattgtggttggtgatattggtgacatt-accaaccacaatgtta 11448164  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 369553 - 369498
Alignment:
Q  248 ttggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcaca 303  Q
    |||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||    
T  369553 ttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcaca 369498  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 16193850 - 16193888
Alignment:
Q  353 accaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16193850 accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 369440 - 369473
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattg 250  Q
    ||||||||||||||||||||||||||||||||||    
T  369440 tagcacttgggtgacattgtggttgatgacattg 369473  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 17750893 - 17750951
Alignment:
Q  214 ggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||||||||| ||||||| | | |||||||||||||||||||||| ||| ||||||||    
T  17750893 ggatagcacttgtgtgacatagag-ttgatgacattggtgacattggtcaatcacaatgt 17750951  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 5150626 - 5150672
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaacca 267  Q
    |||| |||||||||||| ||| |||||||| ||||||||||||||||    
T  5150626 actttggtgacattgtgcttggtgacattgatgacattggccaacca 5150672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 178660 - 178701
Alignment:
Q  250 ggtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||  |||||||||||| |||||||||||||||||    
T  178660 ggtgacattgatcaaccacaatgtcacatgtggctttcttct 178701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 369542 - 369579
Alignment:
Q  355 caatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagtattatcca 369579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 2913995 - 2913919
Alignment:
Q  217 tagcacttgggtgaca--ttgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttct 291  Q
    ||||||||||||||||  ||||||||| ||| ||||||||| |||  |||||||| ||| ||| ||| |||||||||    
T  2913995 tagcacttgggtgacacattgtggttggtgatattggtgacgttgatcaaccacagtgtcacaagtgtctttcttct 2913919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 5150663 - 5150618
Alignment:
Q  347 aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    ||||||| |||||||||||| |||||| ||||| ||||||||||||    
T  5150663 aatgtcatcaatgtcaccaagcacaatgtcaccaaagtattatcca 5150618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 28581768 - 28581731
Alignment:
Q  354 ccaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  28581768 ccaatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 16193890 - 16193850
Alignment:
Q  212 tcggatagcacttgggtgacattgtggttgatgacattggt 252  Q
    |||||||  ||||||||||||||||||||| ||||||||||    
T  16193890 tcggataatacttgggtgacattgtggttggtgacattggt 16193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 507720 - 507796
Alignment:
Q  228 tgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    |||||||||| ||||||||||||||||||||| |||| |||||| ||||| |||| |||||||||| ||||||||||    
T  507720 tgacattgtgattgatgacattggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaa 507796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 12369 - 12285
Alignment:
Q  217 tagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgttacatgtggctttcttctttttctttcacaa 304  Q
    ||||||||||||||||||||||  | |||||||| |||||||| ||||||||||||| ||| ||| | ||||||||| ||||||||||    
T  12369 tagcacttgggtgacattgtgg--gctgacattg-tgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaa 12285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 12283 - 12225
Alignment:
Q  335 attatggttggt-aatgtcaccaatgtcaccaaccacaatatcacccaagtattatcca 392  Q
    |||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  12283 attatggttggcgaatgtcatcaatgtcaccaactacaatgtcacccaagtattatcca 12225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 12233 - 12279
Alignment:
Q  221 acttgggtgacattgtggttgatgacattggtgacattggccaacca 267  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||||    
T  12233 acttgggtgacattgtagttggtgacattgatgacattcgccaacca 12279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 7199 - 7136
Alignment:
Q  209 ttttcggatagcacttgggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 273  Q
    |||||||||| |||||| ||||||| | | ||| |||||||||||||||||||||| ||||||||    
T  7199 ttttcggataacacttgtgtgacatagag-ttggtgacattggtgacattggccaatcacaatgt 7136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 391
Target Start/End: Original strand, 13402 - 13440
Alignment:
Q  353 accaatgtcaccaaccacaatatcacccaagtattatcc 391  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  13402 accaatgtgaccaaccacaatatcacccaagtgttatcc 13440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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