View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_4 (Length: 501)
Name: NF12716_low_4
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 41074372 - 41073900
Alignment:
| Q |
17 |
ttatgtgtatccaaagcaagctatgataaccttttaaacatatgacctagggacacaaacatgtacaccaaaaaacgccactaaaaaacgacatgtcgac |
116 |
Q |
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| T |
41074372 |
ttatgtgtatccaaagcaagttatgataaacttttaaacatatgacctagggacacaaacat--acaccaaaaaacgccactaaaaaacgacatgtcgac |
41074275 |
T |
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| Q |
117 |
acaagtaaaataatgtgagaaaataaatgaatttgatgacatcacactcaatatcactcttcctatcaaatatcgggacattacaactctcaatgtcacc |
216 |
Q |
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| T |
41074274 |
acaagtaaaataatgtgagaaaataaatgaatttgatgacatcacactcaatatcactcttcctatcaaatatcgggacattacaactctcaatgtcacc |
41074175 |
T |
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| Q |
217 |
aatggaaaaggaaaaattagtgatgaatatttatgattgaaaaaattaaatctctcactaatctacttatttcactcttaagcaagccatgacttaaaac |
316 |
Q |
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| T |
41074174 |
aatggaaaaggaaaaattagtgatgaatatttatgattgaaaaaattaaatctctcactaatctacttatttcactcttaagcaagccatgacttaaaac |
41074075 |
T |
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| Q |
317 |
ttctaagcctatgacctaggacacaagtaatgatttgagaaggatga---tgatctatgaagtacggaagcttcttagattaggcgtgtccggtgttgga |
413 |
Q |
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| T |
41074074 |
ttctaagcgtatgacctaggacacaagtaatgatttgagaaggatgatgatgatctatgaagtacggacgcttcttagattagacgtgtccggtgttgga |
41073975 |
T |
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| Q |
414 |
catgtat-gtgtctggcaccaacacgtataattacagtgaattctaaaaattattagctacctgaatggtgtcttcttct |
492 |
Q |
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| T |
41073974 |
tatgtatcatgtctgacaccaacacgtata-----agtgaattctaaaaattatttgctacctgaatggtgtcttcttct |
41073900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 41074429 - 41074387
Alignment:
| Q |
255 |
gaaaaaattaaatctctcactaatctacttatttcactcttaa |
297 |
Q |
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| T |
41074429 |
gaaaaaattaaatctctcacaattctacttatttcactcttaa |
41074387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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