View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_6 (Length: 460)
Name: NF12716_low_6
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 55 - 304
Target Start/End: Original strand, 31828180 - 31828429
Alignment:
| Q |
55 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctctgctttttcaactttaacccttcttgaagcaaccaa |
154 |
Q |
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| T |
31828180 |
attcaacagaaaaaacccgtattataagggttgtttttattacttgtactttcatctcattctctactttttcaactttaacccttcttgaagcaaccaa |
31828279 |
T |
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| Q |
155 |
cttcattgtttcaacacaaaaaactatattagattgaagaaacaaaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaagg |
254 |
Q |
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| T |
31828280 |
cttcattgtttcaacacaaaaaactatattagattgaagaaacaaaatctatatgaagctgtatcaacaatgagagatgataacttgaagaaaagcaagg |
31828379 |
T |
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| Q |
255 |
tttgttttgtagtaataatgctaattggttttacttcaaattcatatgca |
304 |
Q |
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| T |
31828380 |
tttgttttgtagtaataatgctaattggttttacttcaaattcatatgca |
31828429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 31828476 - 31828561
Alignment:
| Q |
366 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
451 |
Q |
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| T |
31828476 |
ctgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatgatgt |
31828561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 38124325 - 38124245
Alignment:
| Q |
367 |
tgaagctttcatggcccaaaactttggtcaagaaatggtttaatatcaagagtaaaaatgaagactttcaagcggatgatg |
447 |
Q |
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| T |
38124325 |
tgaagctttcatggccaaaaacattggtcaaaaaatggttcaatatcaagaccaaatctcaagactttcaagcagatgatg |
38124245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 38124465 - 38124421
Alignment:
| Q |
204 |
tatatgaagctgtatcaacaatgagagatgataacttgaagaaaa |
248 |
Q |
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| T |
38124465 |
tatatgaagttttctcaacaatgagagatgaaaacttgaagaaaa |
38124421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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