View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12716_low_7 (Length: 453)
Name: NF12716_low_7
Description: NF12716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12716_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 437
Target Start/End: Complemental strand, 1249204 - 1248773
Alignment:
| Q |
6 |
aggagcacagagctggttgtggcttacatctaggcctacaagcttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagc |
105 |
Q |
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|||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1249204 |
aggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaagc |
1249105 |
T |
|
| Q |
106 |
cctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249104 |
cctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
1249005 |
T |
|
| Q |
206 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1249004 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgac |
1248905 |
T |
|
| Q |
306 |
gaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248904 |
gaggtcatcagcaccgtcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtt |
1248805 |
T |
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| Q |
406 |
tttggagtccaggttgagaagaggcttgtatt |
437 |
Q |
| |
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| T |
1248804 |
tttggagtccaggttgagaagaggcttgtatt |
1248773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 49 - 437
Target Start/End: Original strand, 12079465 - 12079853
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||| ||| ||| |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
|
| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
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|| ||||||||||| ||||| ||||| || || |||||||| ||||| |||||||| || ||||||||||| || ||||| |||||||||||||| | | |
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| T |
12079665 |
taaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcaccatctatctcaaggaagttgacacgatgg |
12079764 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttgagaagaggcttgtatt |
437 |
Q |
| |
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|| || ||||||||||||||||||||| ||||||| |||||||||||||| ||||| | ||| ||||||||||||||||||||||||| |
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| T |
12079765 |
atggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttgagaagaggcttgtatt |
12079853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 49 - 437
Target Start/End: Original strand, 12096105 - 12096493
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
|
| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
| |
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||||||| |||||| ||||||| |||||||||||||| ||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| ||| |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
|
| Q |
249 |
gaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgacgaggtcatcagcaccgtcgatctcgaggaagttgacacggtag |
348 |
Q |
| |
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|| ||||||||||| ||||| ||||| || || |||||||| || || |||||||| || |||||||| || || ||||| |||||||||||||| | | |
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| T |
12096305 |
aaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgccatctatctcaaggaagttgacacgatgg |
12096404 |
T |
|
| Q |
349 |
attgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttgagaagaggcttgtatt |
437 |
Q |
| |
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|| || ||||||||||||||||||||| ||||||| |||||||||||||| ||||| | ||| ||||||||||||||||||||||||| |
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| T |
12096405 |
atggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttgagaagaggcttgtatt |
12096493 |
T |
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