View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12717_high_1 (Length: 580)

Name: NF12717_high_1
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12717_high_1
NF12717_high_1
[»] chr4 (5 HSPs)
chr4 (95-563)||(42083066-42083534)
chr4 (167-563)||(42086665-42087051)
chr4 (21-74)||(42083014-42083067)
chr4 (45-142)||(42086520-42086611)
chr4 (451-551)||(29242409-29242508)
[»] chr7 (3 HSPs)
chr7 (178-229)||(22284482-22284533)
chr7 (172-218)||(37603915-37603961)
chr7 (161-225)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (161-216)||(6933139-6933194)
chr2 (178-223)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (172-218)||(30922528-30922574)
chr8 (167-218)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (178-214)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 95 - 563
Target Start/End: Original strand, 42083066 - 42083534
Alignment:
Q  95 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42083066 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaa 42083165  T
Q  195 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatctta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42083166 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatctta 42083265  T
Q  295 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctcttcttctgctgag 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42083266 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctcttcttctgctgag 42083365  T
Q  395 atcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccata 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42083366 atcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccata 42083465  T
Q  495 aaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42083466 aaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 42083534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 167 - 563
Target Start/End: Original strand, 42086665 - 42087051
Alignment:
Q  167 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 266  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  ||| ||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtcg-tgct 42086759  T
Q  267 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac 366  Q
    ||||||||||||||| ||    | ||| |||||||||| ||| ||||||| || | ||||||||||||||| | ||||  | ||||||| |||| || ||    
T  42086760 acatagctttcaaatcat----accttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac 42086854  T
Q  367 ttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaa 466  Q
    |  |||||||||||||||||  | |||||||||||| ||||||| |  ||||||||||||||||||||||||||| ||||||| ||||||||||||||      
T  42086855 tattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttcttcaggagtaacaacttcaactttcattataggttcaagcattct 42086954  T
Q  467 tggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccaca 563  Q
     |||  ||||||||| |||||||||  |||||||   ||||||||||||||||| |||  |||||||||||| ||||||||||||| || |||||||    
T  42086955 cggtccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaagccaacacacttgaatctacatcatggtaagaaccatccaca 42087051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 42083014 - 42083067
Alignment:
Q  21 gcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagca 74  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42083014 gcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagca 42083067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 42086520 - 42086611
Alignment:
Q  45 agtgtaccgacatacataaacatctcagcaatgggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta 142  Q
    ||||||| |||||||  ||||||||||||||  ||||||||||| |||||||||||||||      ||||||||||||||||||||| ||||||||||    
T  42086520 agtgtactgacatactgaaacatctcagcaagaggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta 42086611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
Q  451 taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta 550  Q
    ||||||||||||||   |||  ||||||||| ||||||||   |||| || | |||||||||||||| || |||  ||||||||||||||||||||||||    
T  29242508 taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta 29242410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  178 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 229  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  172 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 218  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  161 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 225  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  161 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 216  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  178 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 223  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  172 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 218  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  167 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 218  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  178 gataataatttgaaaaatggaagaaattgaatgtaac 214  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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