View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_high_11 (Length: 239)
Name: NF12717_high_11
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47727390 - 47727609
Alignment:
| Q |
1 |
ttctattgcattaagcatctgctaaattttggaaaaagacatcaaataagttaataacatacacaagcgttagctaaaataagagcagtgttgaaatttt |
100 |
Q |
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| T |
47727390 |
ttctattgcattaagcatctgctaaattttggaaaaagacatcaaataagttaataacatacacaagcgttagctaaaataagagcagtgttgaaatttt |
47727489 |
T |
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| Q |
101 |
aacaaatgtacattaattaatcatatgacagctacagatgaaacttaatttaatcaggccatgggccatgg-ttacattaggatctatacatttatattt |
199 |
Q |
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| T |
47727490 |
aactaatgtacattaattaatcatatcacagttacagatgaaac----tttaatcaggccatgtgccatggtttacattaggatctatacatttatattt |
47727585 |
T |
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| Q |
200 |
caattgaatctataatgttcacag |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
47727586 |
caattgaatctataatgttcacag |
47727609 |
T |
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