View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_high_4 (Length: 386)
Name: NF12717_high_4
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 8423325 - 8422969
Alignment:
| Q |
16 |
aggatttccaaactgcaatcatatgaagcatattaggaagagtgcatatattatccaaccaataatcaatcgtgaggtcaacaacgtatcgg-aagaaag |
114 |
Q |
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| T |
8423325 |
aggatttccaaactgcaatcatatgaagcatattaggaagagtgcatatattatccaaccaataatcaatcgtgaggtcaacaacgtatggggaagaaag |
8423226 |
T |
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| Q |
115 |
aaaaggagttaaagcgaggaaagtaaaaaacaccagtcctataatacctcaattaaaaataatgaacggaaaacagattaactcttgataattttctcat |
214 |
Q |
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| T |
8423225 |
aaaaggagttaaagcgaggaaagtaaaaaacaccagccctataatacctcaattaaaaataatgaacggaaaacagattaactcttgataattttctcat |
8423126 |
T |
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| Q |
215 |
aaggaataaagaaaggcatcacaagcttaaatttagtttgcaattaatacagactagtatagcaatttaagttacagatgatcctcagcagtttgtaaga |
314 |
Q |
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| T |
8423125 |
aaggaataaagaaaggtatcacaagcttaaatttagtttgcaattaatacagactagtatagcaatttaagttacagatgatcctcagcagtttgtaaga |
8423026 |
T |
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| Q |
315 |
tcgaaacacttaggggaaccgtctacaataaaatttgagatatttacatttgtactt |
371 |
Q |
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| T |
8423025 |
tcgaaacacttaggggaaccgtctacaataaaatttgagatatttacatttgtactt |
8422969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 8399030 - 8399099
Alignment:
| Q |
22 |
tccaaactgcaatcatatgaagcatattaggaagagtgcatatattatccaaccaataatcaatcgtgag |
91 |
Q |
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| T |
8399030 |
tccacactgcaagaatatgaagcatattaggaagaatgcgtgtattatcaaaccaatcattaatcatgag |
8399099 |
T |
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