View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12717_high_6 (Length: 313)

Name: NF12717_high_6
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12717_high_6
NF12717_high_6
[»] chr5 (1 HSPs)
chr5 (1-297)||(10930344-10930640)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10930344 - 10930640
Alignment:
Q  1 ctccttccatgtatcctcttcaacatcatacacaactccttctttagcagcatcgccttttacgtttaccatataaagctttcctctccatcctacagca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10930344 ctccttccatgtatcctcttcaacatcatacacaactccttctttagcagcatcgccttttacgtttaccatataaagctttcctctccatccaacagca 10930443  T
Q  101 tctacagcttccctgctgaatctgccgtccttcatatcggttttcttctcccaaatgggatcgttgatcgggtcccacttctctattgactttgctacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10930444 tctacagcttccctgctgaatctgccgtccttcatatcggttttcttctcccaaatgggatcgttgatcgggtcccacttctctattgactttgctacat 10930543  T
Q  201 caactgagaaatgggacccaataccacttgctacatagaccataccttctgatgtgcctaatgcacaccagcggcgtggattagttagggcaggtcc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10930544 caactgagaaatgggacccaataccacttgctacatagaccataccctctgatgtgcctaatgcacaccagcggcgtggattagttagggcaggtcc 10930640  T

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