View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_low_10 (Length: 249)
Name: NF12717_low_10
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 47727243 - 47727015
Alignment:
| Q |
10 |
gtgttaggtcgtgttcatgacatttgtgcacttgactctattaatttttaactaaagttattttatactacatggtggtgatactgaggcatcttt---- |
105 |
Q |
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| T |
47727243 |
gtgttaggtcgtgttcatgacatttgtgcacttgactctattaatttataactaaagttattttatactacatggtggtgatactgaggcatctttcttt |
47727144 |
T |
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| Q |
106 |
gtcttggggcagatttacaagttctgagatgaaagttttcaaatcttcattaatatgccctttgatctttctagtgctcttcctcaattttttccttgtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47727143 |
gtcttggggcagatttacaagttctgagatgaaagttttcaaatcttcattaatatgccctttgatctttctagtgctcttcctcaattttttccttgtt |
47727044 |
T |
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| Q |
206 |
attttcactccaaatgaaaatcatatgat |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47727043 |
attttcactccaaatgaaaatcatatgat |
47727015 |
T |
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