View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_low_11 (Length: 245)
Name: NF12717_low_11
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 10930125 - 10930361
Alignment:
| Q |
9 |
cacagatatcccggcggtggatacaacacaaattctaccttgttttgcaaccatttgttcagctcctttgagtctttgagactcaaaaatcttttcccaa |
108 |
Q |
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| T |
10930125 |
cacagatatcccggcggtggaaacaacacaaattctaccttgttttgcaaccatttgttcagctcctttgagtctttgagactcaaaaatcttttcccaa |
10930224 |
T |
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| Q |
109 |
atatcatcttctgagttgtatctactaagaatacctttagcttcatccaccacatacatcacttcctcctccatcgccgccaccggtcctcgaaacccta |
208 |
Q |
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| T |
10930225 |
atatcatcttctgaattgtatctactaagaatacctttagcttcatccaccacatacatcacttcctcctccatcgccgccaccggtcctcgaaacccta |
10930324 |
T |
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| Q |
209 |
acaacatcccctctggcctctccttccctgtatcctc |
245 |
Q |
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| T |
10930325 |
acaacatcccctctggcatctccttccatgtatcctc |
10930361 |
T |
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