View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_low_2 (Length: 438)
Name: NF12717_low_2
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 18716519 - 18716725
Alignment:
| Q |
17 |
atcaagagctaccacaattccaagaccaacaccaccaaattcatagctttttaatccttttggtgattgaatctttgagctcaattcaaacgggcttcta |
116 |
Q |
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| T |
18716519 |
atcaagagctaccacaattccaagaccaacaccaccaaattcatagctttttaatccttttggtgattgaatctttgagctcaattcaaacgggcttcta |
18716618 |
T |
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| Q |
117 |
ggacttccgatcgtgtcgaaaagcccggttgtactttcaccaaacactaatagttctgaaaattttcggatcaagtgatgggatttctttcccaacatga |
216 |
Q |
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| T |
18716619 |
ggacttccgatcgtgtcgaaaagcccggttgtactttcaccaaacactaatagttctgaaaattttcggatcaagtgatgggatttctttcccaacatga |
18716718 |
T |
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| Q |
217 |
tgaagat |
223 |
Q |
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||||||| |
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| T |
18716719 |
tgaagat |
18716725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 18716791 - 18716913
Alignment:
| Q |
289 |
gggttttataaaagcatataagttaggagagttgtaatataattgatggtttggtattggaataagcccgctgtttcatttggaattattcgggtgatga |
388 |
Q |
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| T |
18716791 |
gggttttataaaagcatataagttaggagagttgtaatataattgatggtttggtattggaataagcccgctgtttcatttggaattattcgggtgatga |
18716890 |
T |
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| Q |
389 |
ttgctagagatatgtccaacaaa |
411 |
Q |
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| T |
18716891 |
ttgctagagatatgtccaacaaa |
18716913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 51814163 - 51814087
Alignment:
| Q |
17 |
atcaagagctaccacaattccaagaccaacaccaccaaattcatagctttttaatccttttggtgattgaatctttg |
93 |
Q |
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| T |
51814163 |
atcaagagctgccacaattttgagaccaacaccaccaaggtcatagttttttagacctcttggtgattgcatctttg |
51814087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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