View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_low_7 (Length: 306)
Name: NF12717_low_7
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 43802140 - 43802428
Alignment:
| Q |
1 |
caccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcatttgaaactt |
100 |
Q |
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| T |
43802140 |
caccaaccgatcgatccctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcatttgaaactt |
43802239 |
T |
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| Q |
101 |
ccgcaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaagaa |
200 |
Q |
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| T |
43802240 |
ccgcaacggttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaacaa |
43802339 |
T |
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| Q |
201 |
attagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttg |
289 |
Q |
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| T |
43802340 |
attagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttg |
43802428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 43812716 - 43812997
Alignment:
| Q |
8 |
cgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcatttgaaacttccgcaac |
107 |
Q |
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|||| |||| |||||||||| ||| ||||||| |||||||||||||||||||||||||| || |||||||||| |||| ||||||||| ||||| ||||| |
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| T |
43812716 |
cgattgatccctctgacgaacaaagccatgtcattgatcgaacaaacataaaggctatagccttagacatgatcgccgcggcatttgacacttctgcaac |
43812815 |
T |
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| Q |
108 |
agttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaagaaattagta |
207 |
Q |
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| T |
43812816 |
cattgtggagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatctccaacaagagctggatagtgtagttgggatgaacaaattagtg |
43812915 |
T |
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| Q |
208 |
gaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttg |
289 |
Q |
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| T |
43812916 |
gaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctgcaggaccacttg |
43812997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
115 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
164 |
Q |
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| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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