View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12717_low_8 (Length: 263)
Name: NF12717_low_8
Description: NF12717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12717_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 50201945 - 50202183
Alignment:
| Q |
17 |
atacttacatttagaatatcaacaacaacaactattggtaaagtaatctcaaagaaagttacaccattaaacagaactccttcccctaaagttgccatta |
116 |
Q |
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| T |
50201945 |
atacttacatttagaatatcaacaacaacaactgttggtaaagtaatctcaaagaaagttacaccattaaacagaactccttcccctaaagttgccatta |
50202044 |
T |
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| Q |
117 |
tcaaacggatattccgctcatcccgtggttaattagtaa-ttatacacaagttagaaagtaaccacatgtgcataagattcgtttagattgatttgacaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50202045 |
tcaaacggatattccgctcatcccgtggttaattagtaatttatacacaggttagaaagtaaccacatgtgcataagattcggttagattgatttgacaa |
50202144 |
T |
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| Q |
216 |
tgtacagcacacagtctttgtattcattcatcagtgaac |
254 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
50202145 |
tgtacagcacacagtctttgtattcattcatcattgaac |
50202183 |
T |
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