View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12718_high_10 (Length: 367)

Name: NF12718_high_10
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12718_high_10
NF12718_high_10
[»] chr8 (6 HSPs)
chr8 (19-352)||(8578428-8578761)
chr8 (120-222)||(8603608-8603710)
chr8 (120-158)||(35869744-35869782)
chr8 (110-158)||(12972753-12972801)
chr8 (163-209)||(6509328-6509374)
chr8 (110-155)||(34563147-34563192)
[»] chr7 (7 HSPs)
chr7 (149-223)||(514752-514826)
chr7 (166-234)||(39505958-39506026)
chr7 (122-155)||(26030895-26030928)
chr7 (110-158)||(7100742-7100790)
chr7 (118-158)||(18749935-18749975)
chr7 (112-144)||(30133950-30133982)
chr7 (116-148)||(31751870-31751902)
[»] chr4 (6 HSPs)
chr4 (120-158)||(24443945-24443983)
chr4 (109-156)||(4471067-4471114)
chr4 (164-218)||(3175951-3176005)
chr4 (165-210)||(29263371-29263416)
chr4 (110-158)||(485978-486026)
chr4 (110-158)||(46053597-46053645)
[»] scaffold0085 (1 HSPs)
scaffold0085 (110-150)||(26174-26214)
[»] chr3 (6 HSPs)
chr3 (171-222)||(44284092-44284143)
chr3 (110-158)||(29094278-29094326)
chr3 (120-158)||(28881833-28881871)
chr3 (173-222)||(53848075-53848124)
chr3 (165-209)||(24158528-24158572)
chr3 (169-237)||(30923895-30923963)
[»] chr6 (5 HSPs)
chr6 (163-208)||(33067157-33067202)
chr6 (110-149)||(4247218-4247257)
chr6 (110-156)||(21919971-21920017)
chr6 (121-158)||(31668810-31668847)
chr6 (110-158)||(31337920-31337968)
[»] chr5 (13 HSPs)
chr5 (111-147)||(8472007-8472043)
chr5 (110-158)||(26516195-26516243)
chr5 (112-156)||(31687924-31687968)
chr5 (166-210)||(40205098-40205142)
chr5 (108-158)||(6738532-6738582)
chr5 (164-210)||(28409389-28409435)
chr5 (110-155)||(912995-913040)
chr5 (164-237)||(4855698-4855771)
chr5 (113-158)||(20982260-20982305)
chr5 (109-158)||(38819700-38819749)
chr5 (109-149)||(6725133-6725173)
chr5 (110-158)||(14716595-14716643)
chr5 (110-158)||(23999053-23999101)
[»] chr2 (11 HSPs)
chr2 (171-210)||(43591534-43591573)
chr2 (163-209)||(9878707-9878753)
chr2 (108-146)||(29419801-29419839)
chr2 (112-157)||(19333411-19333456)
chr2 (108-149)||(42817510-42817551)
chr2 (110-158)||(2400053-2400101)
chr2 (124-168)||(9404511-9404555)
chr2 (122-158)||(34339032-34339068)
chr2 (130-166)||(37053511-37053547)
chr2 (163-235)||(39983341-39983413)
chr2 (121-149)||(43965264-43965292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (164-237)||(159970-160043)
[»] chr1 (1 HSPs)
chr1 (173-210)||(4699639-4699676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (110-158)||(27473-27521)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 8578428 - 8578761
Alignment:
Q  19 atcgctgcctcgttcttcttcattattgtttttgcttccatgatagtgtgttttgtttgttcttctgtgtttaaaacctgtttcaaaatgtttaattaaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8578428 atcgctgcctcgttcttcttcattattgtttttgcttccatgatagtgtgttttgtttgttcttctgtgtttaaaacctgtttcaaaatgttcaattaaa 8578527  T
Q  119 tgcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaata 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  8578528 tgcttatagcataagcacttatcatataagtgcttatgtacagactataagctgttttcataagctatcccggagagcttgtagaaataagccgaaaata 8578627  T
Q  219 gcttcaagacatgtcataatgnnnnnnnatatagctaagcaatctgcagtactaggcagaattggttttgtagtttggatcaatgaatttgaatgctaac 318  Q
    ||||| |||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8578628 gcttctagacatgtcataatgtttttttatatagctaagcaatctgcagtactgggcagaattggttttgtagtttggatcaatgaatttgaatgctaac 8578727  T
Q  319 aattttatctccctatgttgtgtttataggttat 352  Q
    ||||||||||||||||||||||||||||||||||    
T  8578728 aattttatctccctatgttgtgtttataggttat 8578761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 8603608 - 8603710
Alignment:
Q  120 gcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatag 219  Q
    |||||||||||||||||||| ||||||||| |||||||| | |||||||| | ||| |||||| ||||| ||||||||||||||||| ||| | ||||||    
T  8603608 gcttatagcataagcacttaccatataagtgcttatgtataaactataagctatttgcataagttatcctggagagcttgtagaaatgagcggaaaatag 8603707  T
Q  220 ctt 222  Q
    |||    
T  8603708 ctt 8603710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 35869744 - 35869782
Alignment:
Q  120 gcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35869744 gcttatagcataagcacttatcatataagttcttatgta 35869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 12972753 - 12972801
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgta 12972801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 6509374 - 6509328
Alignment:
Q  163 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 209  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||||||    
T  6509374 ctataagctgttttcataagctatcctggagagcttattgaaataag 6509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 34563147 - 34563192
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttat 155  Q
    ||||||||| ||||||||||||| || ||||||||||||| |||||    
T  34563147 ttaattaaacgcttatagcataaacatttatcatataagtgcttat 34563192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 514752 - 514826
Alignment:
Q  149 ttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttc 223  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||||||  |||||||| | ||||| ||||    
T  514752 ttcttatgtacaacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataacttc 514826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 39505958 - 39506026
Alignment:
Q  166 taaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtca 234  Q
    |||| |||||||||||||||| | |||||| || | ||||||||| | |||||||||| ||||||||||    
T  39505958 taagttgttttcataagctattctggagagtttatggaaataagctgaaaatagcttccagacatgtca 39506026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 26030895 - 26030928
Alignment:
Q  122 ttatagcataagcacttatcatataagttcttat 155  Q
    |||||||||||||||||||||||||||| |||||    
T  26030895 ttatagcataagcacttatcatataagtacttat 26030928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 7100790 - 7100742
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||||||||| ||||||  ||||||||||||| ||| ||||    
T  7100790 ttaattaaatgcttatagtataagcgtttatcatataagtacttgtgta 7100742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 18749975 - 18749935
Alignment:
Q  118 atgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||||||||| |||||||||||||| ||| ||||    
T  18749975 atgcttatagcataagctcttatcatataagtacttgtgta 18749935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 30133950 - 30133982
Alignment:
Q  112 aattaaatgcttatagcataagcacttatcata 144  Q
    ||||||||||||||||||||||| |||||||||    
T  30133950 aattaaatgcttatagcataagcgcttatcata 30133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 31751902 - 31751870
Alignment:
Q  116 aaatgcttatagcataagcacttatcatataag 148  Q
    ||||||||||||||||| |||||||||||||||    
T  31751902 aaatgcttatagcataatcacttatcatataag 31751870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 24443945 - 24443983
Alignment:
Q  120 gcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24443945 gcttatagcataagcacttatcatataagttcttatgta 24443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 4471067 - 4471114
Alignment:
Q  109 tttaattaaatgcttatagcataagcacttatcatataagttcttatg 156  Q
    ||||||||| ||||||||||||||||| |||| |||||||| ||||||    
T  4471067 tttaattaactgcttatagcataagcaattattatataagtgcttatg 4471114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 3175951 - 3176005
Alignment:
Q  164 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaata 218  Q
    |||||| |||||||||||||||||| | || ||||||||||||||| || |||||    
T  3175951 tataagctgttttcataagctatcctgaagggcttgtagaaataagtcgaaaata 3176005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 29263371 - 29263416
Alignment:
Q  165 ataaggtgttttcataagctatcccggagagcttgtagaaataagc 210  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||    
T  29263371 ataagttgttttcataagctatcctgcagagcttgtggaaataagc 29263416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 485978 - 486026
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||  ||||||||||||||| ||||||||| |||| ||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgta 486026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 46053597 - 46053645
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||  ||||||||||| || ||||||||||||||| ||||||||    
T  46053597 ttaattaagcgcttatagcatgagtacttatcatataagtacttatgta 46053645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 26214 - 26174
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagtt 150  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26214 ttaattaagtgcttatagcataagcacttatcatataagtt 26174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 44284143 - 44284092
Alignment:
Q  171 tgttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 222  Q
    |||||||||||||||||| ||||||||| ||||||||||| | |||||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatagctt 44284092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 29094278 - 29094326
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgta 29094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 28881871 - 28881833
Alignment:
Q  120 gcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  28881871 gcttatagcataagaacttatcatataagctcttatgta 28881833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 53848124 - 53848075
Alignment:
Q  173 ttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 222  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||| |||||    
T  53848124 ttttcataaactatcccagagagcttatagaaataagccgaaaacagctt 53848075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  165 ataaggtgttttcataagctatcccggagagcttgtagaaataag 209  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 30923963 - 30923895
Alignment:
Q  169 ggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 237  Q
    ||||||||||||| ||||||  ||||| || ||||||||||| | ||| |||||  |||||||||||||    
T  30923963 ggtgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataa 30923895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 33067157 - 33067202
Alignment:
Q  163 ctataaggtgttttcataagctatcccggagagcttgtagaaataa 208  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||    
T  33067157 ctataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 4247257 - 4247218
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagt 149  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  4247257 ttaattaagtgcttatagcataagtacttatcatataagt 4247218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 21919971 - 21920017
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatg 156  Q
    ||||||||  |||||||||||||| ||||||||||||||| ||||||    
T  21919971 ttaattaagcgcttatagcataagtacttatcatataagtgcttatg 21920017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 31668847 - 31668810
Alignment:
Q  121 cttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgta 31668810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 31337920 - 31337968
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||| ||||||||||||| |||||  ||||||| ||||||||    
T  31337920 ttaattaaatgtttatagcataagcgcttattgtataagtacttatgta 31337968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 8472007 - 8472043
Alignment:
Q  111 taattaaatgcttatagcataagcacttatcatataa 147  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8472007 taattaaatgcttttagcataagcacttatcatataa 8472043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 26516195 - 26516243
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgta 26516243  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 31687924 - 31687968
Alignment:
Q  112 aattaaatgcttatagcataagcacttatcatataagttcttatg 156  Q
    |||||||||||||||||||| || |||||||||||||| ||||||    
T  31687924 aattaaatgcttatagcataggcgcttatcatataagtgcttatg 31687968  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 40205142 - 40205098
Alignment:
Q  166 taaggtgttttcataagctatcccggagagcttgtagaaataagc 210  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagc 40205098  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 6738582 - 6738532
Alignment:
Q  108 gtttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||  | ||||||||||| |||||||||||||||| ||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgta 6738532  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 28409435 - 28409389
Alignment:
Q  164 tataaggtgttttcataagctatcccggagagcttgtagaaataagc 210  Q
    |||||| | |||| ||||||||||||||||| |||||||||||||||    
T  28409435 tataagctatttttataagctatcccggagaacttgtagaaataagc 28409389  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 913040 - 912995
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttat 155  Q
    |||||||||||||||||  |||| |||||||||||||||| |||||    
T  913040 ttaattaaatgcttatactataaacacttatcatataagtacttat 912995  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 4855698 - 4855771
Alignment:
Q  164 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 237  Q
    |||||| ||||||||||| |||||||  |||||||  |||||||||||| ||| ||||||   |||||||||||    
T  4855698 tataagttgttttcataaactatcccaaagagcttacagaaataagccgaaaacagcttctgaacatgtcataa 4855771  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 20982305 - 20982260
Alignment:
Q  113 attaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||| |||||||||||||||  |||||||||||||| ||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgta 20982260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 38819749 - 38819700
Alignment:
Q  109 tttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||  |||| ||||||||||||||||||||||  ||||||||    
T  38819749 tttaattaaatttttatggcataagcacttatcatataagggcttatgta 38819700  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 6725133 - 6725173
Alignment:
Q  109 tttaattaaatgcttatagcataagcacttatcatataagt 149  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  6725133 tttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 14716643 - 14716595
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||| ||||||||||||||| | || |||||||||| ||||||||    
T  14716643 ttaattaagtgcttatagcataaggatttgtcatataagtgcttatgta 14716595  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23999053 - 23999101
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||||||||||||||||| |||||  |||||||||||||| ||| ||||    
T  23999053 ttaattaaatgcttatagaataagggcttatcatataagtgcttgtgta 23999101  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 43591573 - 43591534
Alignment:
Q  171 tgttttcataagctatcccggagagcttgtagaaataagc 210  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  43591573 tgttttcataagctatcccgaagagcttgtggaaataagc 43591534  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 9878753 - 9878707
Alignment:
Q  163 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 209  Q
    ||||||| |||||||||  |||||||||||||||||| |||||||||    
T  9878753 ctataagttgttttcattcgctatcccggagagcttgaagaaataag 9878707  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 29419801 - 29419839
Alignment:
Q  108 gtttaattaaatgcttatagcataagcacttatcatata 146  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  29419801 gtttaattaaatgcttatagcataaaaacttatcatata 29419839  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 19333456 - 19333411
Alignment:
Q  112 aattaaatgcttatagcataagcacttatcatataagttcttatgt 157  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||    
T  19333456 aattaaacgcttatagcataagcacttaccacataagtgcttatgt 19333411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 42817551 - 42817510
Alignment:
Q  108 gtttaattaaatgcttatagcataagcacttatcatataagt 149  Q
    |||||||||| ||||||||||||||||  |||||||||||||    
T  42817551 gtttaattaagtgcttatagcataagcgtttatcatataagt 42817510  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 2400053 - 2400101
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||    
T  2400053 ttaattaaatgtttatggcataaacaattatcatataagtgcttatgta 2400101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 9404511 - 9404555
Alignment:
Q  124 atagcataagcacttatcatataagttcttatgtacagactataa 168  Q
    ||||||||| |||||||||||||||| |||||||| | |||||||    
T  9404511 atagcataaacacttatcatataagtgcttatgtataaactataa 9404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 34339032 - 34339068
Alignment:
Q  122 ttatagcataagcacttatcatataagttcttatgta 158  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  34339032 ttatagcataaacacttatcatataagtgcttatgta 34339068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 37053511 - 37053547
Alignment:
Q  130 taagcacttatcatataagttcttatgtacagactat 166  Q
    |||||||||||||||||||| |||||||| |||||||    
T  37053511 taagcacttatcatataagtgcttatgtatagactat 37053547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 39983341 - 39983413
Alignment:
Q  163 ctataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcat 235  Q
    ||||||| |||||||||||||||||| ||||||||  |  |||||| | | |||||||||  |||||||||||    
T  39983341 ctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagacatgtcat 39983413  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 43965292 - 43965264
Alignment:
Q  121 cttatagcataagcacttatcatataagt 149  Q
    |||||||||||||||||||||||||||||    
T  43965292 cttatagcataagcacttatcatataagt 43965264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 160043 - 159970
Alignment:
Q  164 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 237  Q
    |||||| ||||||||||||||||||   ||||||||| ||||||||| | |||  ||||  |||||||||||||    
T  160043 tataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataa 159970  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 4699676 - 4699639
Alignment:
Q  173 ttttcataagctatcccggagagcttgtagaaataagc 210  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagc 4699639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 27473 - 27521
Alignment:
Q  110 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 158  Q
    |||| |||| ||||||||||||||| |||||||| ||||| ||||||||    
T  27473 ttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgta 27521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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