View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12718_high_11 (Length: 362)

Name: NF12718_high_11
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12718_high_11
NF12718_high_11
[»] chr7 (2 HSPs)
chr7 (1-348)||(46708885-46709232)
chr7 (1-327)||(46707941-46708267)
[»] chr1 (2 HSPs)
chr1 (1-257)||(36926359-36926615)
chr1 (20-78)||(47126843-47126901)
[»] chr8 (10 HSPs)
chr8 (1-108)||(6262182-6262289)
chr8 (1-48)||(6273451-6273498)
chr8 (1-48)||(6389882-6389929)
chr8 (1-47)||(6368901-6368947)
chr8 (1-50)||(6456154-6456203)
chr8 (1-46)||(7457983-7458028)
chr8 (1-46)||(7470385-7470430)
chr8 (203-259)||(6261939-6261995)
chr8 (2-50)||(6409129-6409177)
chr8 (1-45)||(6423160-6423204)
[»] chr5 (1 HSPs)
chr5 (1-60)||(9606280-9606339)
[»] chr2 (2 HSPs)
chr2 (1-42)||(42692174-42692215)
chr2 (203-255)||(42689835-42689887)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 46709232 - 46708885
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709232 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcct 46709133  T
Q  101 gagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacgggacaattgcagactcttgttggaatttcgc 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  46709132 gagaaaggaactatagagtatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacggcacaattgcagactcttgttggcatttcgc 46709033  T
Q  201 ttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatgcagaaccactggaagcatttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46709032 ttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatgcagagccactggaagcatttga 46708933  T
Q  301 caggtttggaaagaaactgaaagaaattgaagaaagaattgtagctat 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46708932 caggtttggaaagaaactgaaagaaattgaagaaagaattgtagctat 46708885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 46708267 - 46707941
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcct 100  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||| || ||  ||| ||||| ||||||| | |||||||||    
T  46708267 atggattgcttcagccctacatgcagctgtaaaatttggacaatatccttatgcaagttactcgcctaat-gtctaacaaaaagtcgcagtttcatgcct 46708169  T
Q  101 gagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttt-tgaaaacaatcacgggacaattgcagactcttgttggaatttcg 199  Q
    ||||||||||||||||| ||| ||||||||||| |||||||||| || ||||||| |||||||| |  |||  |||||||||| |||||||||  |||||    
T  46708168 gagaaaggaactatagagtattatgaacttgtggcaaatcctgagaaggctttttctgaaaacagttgcggcgcaattgcagattcttgttggcgtttcg 46708069  T
Q  200 cttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagtatgcattggacatgtgatgcagaaccactggaagcatttg 299  Q
    |||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||||| ||  ||||||| || ||||||||| ||| ||||||||||||    
T  46708068 cttatagaaatactgtctgcacattcttctgatgaggtctaccttggagaaagagacactaaacattggatatatgatgcagagccattggaagcatttg 46707969  T
Q  300 acaggtttggaaagaaactgaaagaaat 327  Q
    |||  |||||||||||||||||||||||    
T  46707968 acaaatttggaaagaaactgaaagaaat 46707941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 36926359 - 36926615
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcct 100  Q
    |||||||||||||||||| ||||| || || ||||||||||| ||||| | || ||| ||  |||| |  |||||  | || || || ||| ||||||||    
T  36926359 atggattgcttcagctctccatgctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcct 36926458  T
Q  101 gagaaaggaactatagattatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacgggacaattgcagactcttgttggaatttcgc 200  Q
    || |||||||||  ||| ||  |||||||| ||  ||||||||| ||||||||| |||||||||||||   ||| || ||  || || ||||  |||| |    
T  36926459 gaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcac 36926558  T
Q  201 ttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagaca 257  Q
    || | ||||| |||||||  ||| ||  ||||||||||||||||||||| |||||||    
T  36926559 ttgtggaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagaca 36926615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 47126901 - 47126843
Alignment:
Q  20 catgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaac 78  Q
    ||||||||||| |||||||||||||| |||| ||||||||||  |||||| ||||||||    
T  47126901 catgcagctgtgaactttggacaatacccttatgcaggttacctaccaaatcgtccaac 47126843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6262289 - 6262182
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggttactcaccaaaccgtccaacaataagtcgccgattcatgcct 100  Q
    ||||| |||||||||||| ||||||||||| || |||||||||||||| | || ||||| |  |  ||||||||||||  | ||| | ||||| ||||||    
T  6262289 atggactgcttcagctcttcatgcagctgttaattttggacaatatccgtatggaggtttcatattaaaccgtccaactcttagtaggcgattaatgcct 6262190  T
Q  101 gagaaagg 108  Q
    ||||||||    
T  6262189 gagaaagg 6262182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6273498 - 6273451
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatcc 48  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||||    
T  6273498 atggattgcttcagcacttcatgcagctgttaattttggacaatatcc 6273451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6389929 - 6389882
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatcc 48  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||||    
T  6389929 atggattgcttcagcacttcatgcagctgttaattttggacaatatcc 6389882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6368947 - 6368901
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatc 47  Q
    ||||||||||||||| || ||||||||||| || |||||||||||||    
T  6368947 atggattgcttcagcacttcatgcagctgttaattttggacaatatc 6368901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6456203 - 6456154
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatcctt 50  Q
    ||||| |||||||||||| |||||||| || ||||||||||| |||||||    
T  6456203 atggactgcttcagctcttcatgcagcagttaactttggacagtatcctt 6456154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7458028 - 7457983
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatat 46  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||    
T  7458028 atggattgcttcagcacttcatgcagctgttaattttggacaatat 7457983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7470430 - 7470385
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatat 46  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||    
T  7470430 atggattgcttcagcacttcatgcagctgttaattttggacaatat 7470385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 6261995 - 6261939
Alignment:
Q  203 atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagacagt 259  Q
    |||||||| ||||| |  ||| |||||||||||  ||||||||||||||||||||||    
T  6261995 atagaaatattgtcgaggcatgcttctgatgagtactaccttggacaaagagacagt 6261939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 6409177 - 6409129
Alignment:
Q  2 tggattgcttcagctctacatgcagctgtaaactttggacaatatcctt 50  Q
    ||||| |||||||| || ||||||||||| || ||||||||||||||||    
T  6409177 tggatggcttcagcacttcatgcagctgttaattttggacaatatcctt 6409129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6423204 - 6423160
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaata 45  Q
    ||||||||||||||| || ||||||||||| || |||||||||||    
T  6423204 atggattgcttcagcacttcatgcagctgttaattttggacaata 6423160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9606280 - 9606339
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggacaatatccttttgcaggtta 60  Q
    ||||| |||||| ||||| ||||||||||| || |||||||||||||||| || ||||||    
T  9606280 atggactgcttctgctcttcatgcagctgttaattttggacaatatccttatggaggtta 9606339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42692215 - 42692174
Alignment:
Q  1 atggattgcttcagctctacatgcagctgtaaactttggaca 42  Q
    |||||||||||||||||| ||||||||||| || ||||||||    
T  42692215 atggattgcttcagctcttcatgcagctgttaattttggaca 42692174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 42689835 - 42689887
Alignment:
Q  203 atagaaattttgtctacacattcttctgatgaggtctaccttggacaaagaga 255  Q
    |||||||| ||||| | |||| |||||||||| || |||||||||||||||||    
T  42689835 atagaaatattgtcaagacatgcttctgatgaagtttaccttggacaaagaga 42689887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University