View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_high_15 (Length: 297)
Name: NF12718_high_15
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 21122624 - 21122886
Alignment:
| Q |
10 |
aagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatgg |
109 |
Q |
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| T |
21122624 |
aagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtctatgg |
21122723 |
T |
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| Q |
110 |
ttgcgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataata |
209 |
Q |
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| T |
21122724 |
ttgcgtttaaaagaaatgaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttatacaatgataata |
21122823 |
T |
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| Q |
210 |
gaggtgcattgaaaatccttgtaaccacacgtattgagaatgtgtgtaatttaatgaattgtc |
272 |
Q |
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| T |
21122824 |
gaggtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtattttaatgaattgtc |
21122886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 21115200 - 21115363
Alignment:
| Q |
13 |
aactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttg |
112 |
Q |
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| T |
21115200 |
aactccaaatattagaggcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttg |
21115299 |
T |
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| Q |
113 |
cgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttga |
176 |
Q |
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| T |
21115300 |
tgtttaaaacaaaagaagcgaattcttataatagtggacgatctatggagagagtttcatttga |
21115363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 21715745 - 21715534
Alignment:
| Q |
31 |
cattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaag |
130 |
Q |
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| T |
21715745 |
cattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaa |
21715646 |
T |
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| Q |
131 |
agaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttg |
230 |
Q |
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| T |
21715645 |
cgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacatagacaatgttaacaagggcgcatggaaaatccttg |
21715546 |
T |
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| Q |
231 |
taaccacacgta |
242 |
Q |
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| T |
21715545 |
taaccactcgta |
21715534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 23010646 - 23010436
Alignment:
| Q |
32 |
attcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaaga |
131 |
Q |
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||||||||| |||| || ||| | || ||| | ||||||| |||||||||||| || ||||||||||||||| | |||||| |||| ||||||| ||| |
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| T |
23010646 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagc |
23010547 |
T |
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| Q |
132 |
gaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttgt |
231 |
Q |
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| T |
23010546 |
ggattctcgtaatagtagatgatttatggagagagtttgatttgaacgatgtagggattcgcttagacaatgataacaagggtgcatggaagatccttgc |
23010447 |
T |
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| Q |
232 |
aaccacacgta |
242 |
Q |
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|||||| |||| |
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| T |
23010446 |
aaccactcgta |
23010436 |
T |
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