View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_high_16 (Length: 276)
Name: NF12718_high_16
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 48365260 - 48364990
Alignment:
| Q |
1 |
cctcttataaattttactagaaaaacttggtaaaatttatgcaaataccgtaagatttaaaatacaaagcaatagtaactgtgtggtnnnnnnnn--tac |
98 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48365260 |
cctcttataaatcttactagaaaaacttggtaaaatttatgcaaataccgtaagatttaaaatacaaagcaatagtaactgtgtggtaaaaaaaaaatac |
48365161 |
T |
|
| Q |
99 |
tagtactag---aagataaaggacaaaagaattttagctgaagtttatagtacctggggtggcagagaattttgttgatgaagaaagtgaccaattagtt |
195 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365160 |
tagtactagtagaagataaaggacaaaagaattttagctgaagtttatagtacctggggtggcagagaattttgttgatgaagaaagtgaccaattagtt |
48365061 |
T |
|
| Q |
196 |
gtgttatgctgactctaattccaattaaggaactagtgagtttgtgtatgtatggatcagagacagagtat |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48365060 |
gtgttatgctgactctaattccaattaaggaactagtgagtttgtgtatgtatggatcagagacagagtat |
48364990 |
T |
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