View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_high_6 (Length: 430)
Name: NF12718_high_6
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 37489013 - 37489416
Alignment:
| Q |
11 |
cataggtgccggttcgaaaaattaacataggcgtaatgttctggattggacttttgagatggccgaagcctagctaatatcatttccatcacattaattc |
110 |
Q |
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| T |
37489013 |
cataggtgccggttcagaaaattaacataggcgtaatgttcttgattggacttttgagatggccgaagcctagctaatatcatttccatcacattaattc |
37489112 |
T |
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| Q |
111 |
aagcaaaagggtaaacttctttcggagattaaaacaagactcgacgattcgactccacctgcagaattaacttacagaggtcctgctatgccggtgctac |
210 |
Q |
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| T |
37489113 |
aagcaaaagggtaaacttctttcggagattaaaacaagactcgacgattctactccacctgcagaattaacttacagaggtcctgctatgccggtgctac |
37489212 |
T |
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| Q |
211 |
ttacaccctccataatggaaaatctcatatcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctttatatcaagtcc |
310 |
Q |
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| T |
37489213 |
ttacaccctccataatggaaaatctcatatcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctttatatcaagtcc |
37489312 |
T |
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| Q |
311 |
agtcatatctgatagctgcagtttctcctcctcctgaaaaattcatcaaattataatctttcaggattttagcaattagaatgtcaatatattaaagaag |
410 |
Q |
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| T |
37489313 |
agtcatatctgatagctgcagtttctcctcctcctgaaaaattcatcaaattataatcttttaggattttagcaattagaatgtcaatatattaaagaag |
37489412 |
T |
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| Q |
411 |
tttg |
414 |
Q |
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| T |
37489413 |
tttg |
37489416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 298
Target Start/End: Complemental strand, 4661684 - 4661626
Alignment:
| Q |
240 |
tcttcagatggtttccagtgtcttttcctctgattgatgaaccaattatttatctgctt |
298 |
Q |
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| T |
4661684 |
tcttctgatggtttccagtgcctcttcctttgatttatgaaccagttatttatttgctt |
4661626 |
T |
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