View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_1 (Length: 554)
Name: NF12718_low_1
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 39460710 - 39460876
Alignment:
| Q |
11 |
caaaggaaaaagtaaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaacccctt |
110 |
Q |
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| T |
39460710 |
caaaggaaaaagtaaaaccaacttcgtaaacaattatgtggcatttctcaaccctccccgacgagttaggattatctccattgtaggatcctaacccctt |
39460809 |
T |
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| Q |
111 |
cccaacaccttcccattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
177 |
Q |
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| T |
39460810 |
cccaacaccttcccattaatggctataaaagttcttctcctcataacacaacaacaaatccaatctc |
39460876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 213 - 429
Target Start/End: Original strand, 39460912 - 39461123
Alignment:
| Q |
213 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggggagnnnnnnnnctcccaacaatgtcaggtttgcaacacatagg |
312 |
Q |
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| T |
39460912 |
gagcattattttccttatgtttgagctgaggctgctgcattcttctcctcttctggggagttttttt--tcccaa---tgtcaggtttgcaacacatagg |
39461006 |
T |
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| Q |
313 |
tcgatgatgaatgaggaaaatatcgaattcaataacgactatgtgtgacagatttgacattgcgaaaaattcatttgggatagtgcaaggctgacaaaaa |
412 |
Q |
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| T |
39461007 |
tcgatgatgaatgaggaaaatatcgaattcaataacgactatgtgtgacagatttgacattgccaaaaattcatttgggatagtgcaaggctgacaaaaa |
39461106 |
T |
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| Q |
413 |
ctttacagtggaagact |
429 |
Q |
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| T |
39461107 |
ctttacagtggaagact |
39461123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 39461537 - 39461610
Alignment:
| Q |
467 |
cttaattatagaaataagtgtgtttatttacttacatactgttgatacaaacaacaattatagaaagatggttt |
540 |
Q |
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| T |
39461537 |
cttaattatagaaataagtgtgtttatttacttacatactgttgatacaaacaacaattatagaaagatggttt |
39461610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 464
Target Start/End: Original strand, 39461158 - 39461186
Alignment:
| Q |
436 |
aaaaatcgaagcttaaaaacccaattcac |
464 |
Q |
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| T |
39461158 |
aaaaatcgaagcttaaaaacccaattcac |
39461186 |
T |
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