View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12718_low_10 (Length: 403)
Name: NF12718_low_10
Description: NF12718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12718_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 46400954 - 46400572
Alignment:
| Q |
1 |
aaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaataataacgacattaattatttaagtgattaaacttcagcgtaattcaac |
100 |
Q |
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| T |
46400954 |
aaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaataataacgacattaattatttaagtgattaaacttcagcgtaattcaac |
46400855 |
T |
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| Q |
101 |
attcttagatctttgaattagagtagtgtttagagttaaaccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcgtcctgaagcttct |
200 |
Q |
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| T |
46400854 |
attcttagatcttcgaattagagtagtgtttagagttaaaccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcgtcctgaagcttct |
46400755 |
T |
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| Q |
201 |
tcacatctccggcattaattccttgagaaatcactgcgaatacacaaattctttgaatcagagataaaacgtttaagcgataatcaaatttgtatagaat |
300 |
Q |
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| T |
46400754 |
tcacatctccggcattaattccttgagaaatcactgcgaatacgcaaattctttgaatcagagataaaacgtttaagcgataatcaaatttgtatagaat |
46400655 |
T |
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| Q |
301 |
tctgctttcgaaacttgatttaattttttaacgaaactgtgtataagttaattcgccaaaattttcgagaaatcggagctattat |
385 |
Q |
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| T |
46400654 |
tctgctttcgaaacttgatttaattgtttaacgaaac--tgtataagttaattcgccaaaattttcgagaaatcggagctattat |
46400572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 18554823 - 18554644
Alignment:
| Q |
106 |
tagatctttgaattagagtagtgtttagagttaaa-ccttcttcgtgtgcatcatcaagccattgcaggtaaagatccctgcgtcctgaagcttcttcac |
204 |
Q |
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| T |
18554823 |
tagatattcgaattagagaagtgtttagagttaaaaccttcttcgtgtgcatcatcaagccattgcagataaagatccctgcgtcctgaagcttctttac |
18554724 |
T |
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| Q |
205 |
atctccggcattaattccttgagaaatcactgcgaatacacaaattctttgaatcagagataaaacgtttaagcgataat |
284 |
Q |
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| T |
18554723 |
atctccggcattaattccttgaaaaatcactgcgaagacgcgaattctttgaatcagagacaaaacgtttaagcgataat |
18554644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18554878 - 18554828
Alignment:
| Q |
1 |
aaccttcgcctcagataaacctttgattccagtcaaattctacggaaaaaa |
51 |
Q |
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| T |
18554878 |
aaccttcgcctcagataaacctgtgattccagtcaaattctgcggaaaaaa |
18554828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 11362685 - 11362610
Alignment:
| Q |
161 |
aagccattgcaggtaaagatccctgcgtcctgaagcttcttcacatctccggcattaattccttgagaaatcactg |
236 |
Q |
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| T |
11362685 |
aagctattgcaggtaaagatccctgcatccagaagcttcttcacatcgtcggcgtcaatatcttgagaaatcactg |
11362610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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